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. 2021 Jan 8;126:126001. doi: 10.6028/jres.126.001

Fig. 22. CanDo example of DNA skips and strain compensation on a square lattice for a planar origami. The top row shows the handedness of the torque as determined by the presence and location of skips. Red indicates right-handed torque helices, and blue indicates left-handed torque in the twist schematic. The average twist values are indicated for each of the four designs. As noted in the text, the number of base pairs per turn in an unstrained dsDNA helix is 10.5. The bottom row shows the outputs of the corresponding CanDo models. These illustrate the approximate shape and local helix mobility.

Twist Schematic graphic file with name jres-Image051.jpg graphic file with name jres-Image052.jpg graphic file with name jres-Image053.jpg graphic file with name jres-Image054.jpg
Average Twist Values Default Length: slightly overwound
10.66 bp/turn
33.75A/bp
Alternating Skips:
10.333 bp/turn
34.84A/bp
A1/4 Skips:
10.5 bp/turn
34.28A/bp
A1/4 Skips staggered:
10.5 bp/turn
34.28A/bp
CanDo Prediction graphic file with name jres-Image055.jpg graphic file with name jres-Image057.jpg graphic file with name jres-Image059.jpg graphic file with name jres-Image061.jpg