Table 2.
Reference genome statistics on raw data, genome size estimations, genome assembly, and completeness using BUSCO.
| Statistics | Illumina | Nanopore |
|---|---|---|
| Raw data | ||
| Mean read length (sd) | 150 | 2,697.96 |
| # reads | 345,501,790 | 1,680,336 |
| sum (Gb) | 51.82 | 4.53 |
| Genome size estimation | ||
| Het | 0.0092 | |
| err | 0.0037 | |
| genome size | 110,347,222 | |
| fit | 2.03 | |
| Assembly statistics | ||
| # Scaffolds | 4,060 | |
| N50 scaffold | 419.724 | |
| Mean scaffold size | 32.414 | |
| Longest scaffold | 3,708,885 | |
| %N | 0.0075 | |
| GC content (%) | 43.28 | |
| Total length | 131,602,485 | |
| BUSCO results (%) | ||
| Complete and single-copy BUSCOs | 55.2 | |
| Complete and duplicate BUSCOs | 1.3 | |
| Fragmented BUSCOs | 10.3 | |
| Missing BUSCOs | 33.2 | |