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. 2024 Sep 25;13:RP91849. doi: 10.7554/eLife.91849

Table 2. Seasonal metrics of A(H3N2) epidemic dynamics.

Epidemic metrics are defined and labeled by which outcome category they represent.

Epidemic Outcome Definition Outcome category Citations
Epidemic size Cumulative weekly incidence Burden
Peak incidence Maximum weekly incidence Burden
Maximum time-varying effective reproduction number, Rt The number of secondary cases arising from a symptomatic index case, assuming conditions remain the same Transmissibility Scott et al., 2021; Bhatt et al., 2023
Epidemic intensity Inverse Shannon entropy of the weekly incidence distribution (i.e. the spread of incidence across the season) Sharpness of the epidemic curve Dalziel et al., 2018
Subtype dominance The proportion of influenza positive samples typed as A(H3N2) Viral activity
Excess pneumonia and influenza mortality attributable to A(H3N2) virus Mortality burden in excess of a seasonally adjusted baseline Severity Hansen et al., 2022; Simonsen and Viboud, 2012
Onset week Winter changepoint in incidence Timing Charu et al., 2017
Peak week First week of maximum incidence Timing
Spatiotemporal synchrony Regional variation (s.d.) in onset or peak timing Speed Viboud et al., 2006
Onset to peak Number of days between onset week and peak week Speed
Seasonal duration Number of weeks with non-zero incidence Speed