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. 2024 Sep 16;20(9):e1012560. doi: 10.1371/journal.ppat.1012560

Table 2. Primer sets.

Primer sets used to amplify and clone chitinase genes (chiA or chiB) into the pBAD TOPO TA expression vector. Additional nucleotides (underlined) were added to incorporate an additional stop-codon (TGA), ribosome binding site (AGGA) and start-codon (ATG). Mutagenic primers used to preform site-directed mutagenesis at the active site of the chitinase genes chiA or chiB. Flanking primers are equal to the primers used to produce the enzymatically active enzymes. Nucleotide substitution of the mutant primers is indicated in the box.

Primer name Sequence (5’ = > 3’)
ChiA_fw GTTTCTTGAGAGGAATAATAAATGACAAAAGCTAAAGAAAAATTTAAAACA
ChiA_rev GTTTCTTGGTTTATCATTACCAATTGGATTCATTCCATT
ChiB_fw GTTTCTTGAGAGGAATAATAAATGAATACAATCTCTGTTAAGGCTATGAGT
ChiB_rev GTTTCTTGGTGAATTTGTATTTTCCCAAATTGTTTGTCTATT
Enzymatically inactive enzymes:
ChiA_rev_B GGATGAAGGATATTGGAAAATCAATGTCTACTCC
ChiA_fw_C GGAGTAGACATTGATTTTCAATATCCTTCATCC
ChiB_rev_B GGTTCTCTGTAATCTCCAGGATAGTCCCAATCAATATC
ChiB_fw_C GATATTGATTGGGACTATCCTGGAGATTACAGAGAACC