Table 2. Genome assembly data for Urophora cardui, idUroCard1.1.
| Genome assembly | ||
|---|---|---|
| Assembly name | idUroCard1.1 | |
| Assembly accession | GCA_960531455.1 | |
| Accession of alternate haplotype | GCA_960531475.1 | |
| Span (Mb) | 837.80 | |
| Number of contigs | 642 | |
| Contig N50 length (Mb) | 3.0 | |
| Number of scaffolds | 66 | |
| Scaffold N50 length (Mb) | 163.0 | |
| Longest scaffold (Mb) | 171.21 | |
| Assembly metrics * | Benchmark | |
| Consensus quality (QV) | 60.8 | ≥ 50 |
| k-mer completeness | 100.0% | ≥ 95% |
| BUSCO ** | C:96.5%[S:96.1%,D:0.4%],F:0.9%,M:2.6%,n:3,285 | C ≥ 95% |
| Percentage of assembly mapped
to chromosomes |
99.78% | ≥ 95% |
| Sex chromosomes | Not identified | localised homologous pairs |
| Organelles | Mitochondrial genome: 20.37 kb | complete single alleles |
* Assembly metric benchmarks are adapted from column VGP-2020 of “Table 1: Proposed standards and metrics for defining genome assembly quality” from Rhie et al. (2021).
** BUSCO scores based on the diptera_odb10 BUSCO set using version 5.3.2. C = complete [S = single copy, D = duplicated], F = fragmented, M = missing, n = number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/idUroCard1_1/dataset/idUroCard1_1/busco.