Figure 4. The CLIP and CLAP of Guo et al. performed similarly.

Comparison of CLAP and CLIP pulldowns for various proteins of interest (red text) in relationship to the transcripts abundance. CLIP or CLAP enrichments over input were plotted on the y-axis, and then rearranged with the input abundance on the x-axis for visualization. Each dot represents a transcript. Red dots, significantly enriched CLIP or CLAP pulldowns relative to gene expression. A statistical test was performed using the Cufflinks differentially expressed gene calculation. False discovery rate (FDR) adjusted p-value (q-value) of 0.05 was utilized as the cutoff to determine significance.