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. 2024 Aug 23;13(9):715. doi: 10.3390/pathogens13090715

Table 2.

Primer pairs and PCR conditions used for molecular analyses of strains.

DNA-Region 1 Primer Pairs 1 PCR Conditions Primer Reference
ITS ITS-1F + ITS4 See Bien et al. (2020) [48] Gardes & Bruns (1993) [49], White et al. (1990) [50]
LSU LROR + LR5 See Paulin & Harrington (2000) [51] Rehner & Samuels (1994), Vilgalys & Hester (1990) [46,47]
RPB2 RPB2-5F2 + RPB2-7cR See Braun et al. (2018) for species of Amycosphaerella [52]; see Tanney & Seifert (2018) for species of Phacidiopycnis [53] Liu et al. (1999) [54]
EF-1α EF1-983F + EF1-2218R See Arnold et al. (2021) for species of Coniochaeta [55] Rehner & Buckley (2005) [56]
TUB T1 + Bt-2b See Liu et al. (2019) for species of Pestalotiopsis [54] Glass & Donaldson (1995), O’Donnell & Cigelnik (1997) [57,58]

1 ITS: internal transcribed spacers and intervening 5.8S nrDNA; LSU: large subunit (28S) of the nrRNA gene operon; RPB2: partial DNA-directed RNA polymerase II second-largest subunit gene; EF-1α: partial translation elongation factor 1-alpha gene; TUB: partial beta-tubulin gene.