Table 2.
Closest sequences to the six isolates from GenBank database.
| Gene | Closest Strain (Host, Name, Identity) | |||||
|---|---|---|---|---|---|---|
| Farm A | Farm B | Farm C | ||||
| AHBZ2303 | AHBZ2305 | AHBZ2304 | AHBZ2312 | AHBZ2310 | AHBZ2402 | |
| VP7 | Porcine ZJhz13–3 94.47% | Porcine HuNan–4RV 99.08% | Porcine HuNan–4RV 98.06% | Porcine HuNan–4RV 97.86% | Porcine HuNan–4RV 97.86% |
Porcine DB/BL/2306221 98.06% |
| VP4 | Porcine YT 97.89% |
Porcine HLJ/15/1 95.59% | Porcine HLJ/15/1 95.59% | Porcine GUB88 95.81% |
Porcine HLJ/15/1 95.80% | Porcine AHFY2022 97.34% |
| VP6 | Porcine JN–1 98.43% |
Porcine LH9 99.25% |
Porcine LH9 99.25% |
Porcine DY 97.91% |
Porcine LB2 96.57% |
Porcine GL 99.75% |
| VP1 | Human E931 97.35% | Porcine SWU–1C 97.12% |
Porcine SWU–1C 99.06% |
Porcine H14020027 95.62% |
Human
E931 97.22% |
Porcine S143 97.92% |
| VP2 | Porcine SD–1 96.07% |
Porcine SD–1 95.92% |
Porcine SD–1 95.92% |
Porcine AHFY2022 97.04% | Porcine SD–1 96.26% |
Porcine JSJR2023 97.42% |
| VP3 | Human R946 96.45% | Porcine SCJY–11 96.61% |
Porcine SCJY–11 96.61% |
Porcine SCJY–11 96.97% |
Porcine SCJY–11 96.97% |
Human
NT0042 97.33% |
| NSP1 | Porcine FX17 97.72% | Porcine SD–1 98.15% |
Porcine SD–1 98.15% |
Porcine SD–1 97.34% |
Porcine SD–1 98.29% |
Porcine 14150_53 94.39% |
| NSP2 | Porcine 12070_4 97.60% | Human RVN17.0271 98.11% | Human RVN17.0271 98.11% | Human DPRU1554 98.01% | Human RVN17.0271 98.11% | Porcine SD–1 98.43% |
| NSP3 | Porcine IP058 97.75% | Porcine GL 97.56% |
Porcine GL 97.56% |
Porcine GL 97.66% |
Porcine GL 97.88% |
Porcine SD–1 97.32% |
| NSP4 | Human R479 94.80% | Porcine SCMY–A3 96.40% | Porcine SCMY–A3 96.40% | Porcine HLJ/15/1 95.64% | Porcine SCMY–A3 96.40% |
Porcine HLJ/15/1 96.78% |
| NSP5 | Porcine CN1P7 98.23% | Human LL3354 98.48% | Human LL3354 98.48% | Human LL3354 98.15% | Human LL3354 98.48% | Porcine SD–1 98.82% |
Closest sequences from human rotavirus are indicated in bold.