Table 1.
Complete genomes of V. cholerae O1 used in this study
| Strain | Year | Location | Sourcea | Original laboratory identification | Genome sequence reference | genome completeness |
|---|---|---|---|---|---|---|
| C5 | 1957 | Indonesia | GCF_001887395b | 8 | closed | |
| E9120 | 1961 | Indonesia | GCF_001887655b | 8 | closed | |
| M803 | 1961 | Hong Kong | Institut Pasteur | HK1 | this study | closed |
| E1162 | 1962 | China | GCF_001887495b | 8 | closed | |
| M805 | 1963 | Cambodia | Institut Pasteur | 930059 | this study | closed |
| M808 | 1969 | Vietnam | Institut Pasteur | 1536 | this study | closed |
| M807 | 1969 | Vietnam | Institut Pasteur | 601 | this study | closed |
| M686 | 1968 | Thailand | AFRIMS | SP-EV-29-1 | this study | closed |
| M820 | 1978 | Malaysia | Institut Pasteur | EB 251/1MR | this study | closed |
| M811 | 1971 | Burma | Institut Pasteur | 930029 | this study | not closed |
| M806 | 1964 | India | Institut Pasteur | CRC1106c | this study | closed |
| M804 | 1962 | India | Institut Pasteur | 930030 | this study | closed |
| CRC711 | 1964 | India | GCF_001887435b | 8 | closed | |
| M812 | 1971 | Chad | Institut Pasteur | 930046 | this study | closed |
| M815 | 1973 | Philippines | Institut Pasteur | 430035 | this study | not closed |
| M813 | 1972 | Senegal | Institut Pasteur | 9292 | this study | closed |
| M819 | 1975 | Germany | Institut Pasteur | 232 | this study | closed |
| M814 | 1972 | Morocco | Institut Pasteur | 113 | this study | closed |
| M818 | 1975 | Comoros Islands | Institut Pasteur | 102 | this study | closed |
| M809 | 1970 | Sierra Leone | Institut Pasteur | 930037 | this study | closed |
| M810 | 1970 | Ethiopia | Institut Pasteur | 930038 | this study | closed |
| M647 | 1970 | Bangladesh | CCUG | 13119 | this study | closed |
| N16961 | 1975 | Bangladesh | GCF_900205735b | closed | ||
| M795 | 1976 | Bangladesh | University of Maryland | 30167 | this study | closed |
| P27459 | 1976 | Bangladesh | GCF_013085125b | 70 | closed | |
| M714 | 1979 | Bangladesh | AFRIMS | 96A/CO | this study | not closed |
| M646 | 1979 | Bangladesh | CCUG | 9193 | this study | closed |
| M650 | 1976 | India | Institut Pasteur | 762/76 | this study | not closed |
| E7946 | 1978 | Bahrain | GCF_013085165b | 70 | closed |
aInstitut Pasteur, Paris, France; AFRIMS, Armed Forces Research Institute of Medical Sciences, Bangkok, Thailand; CCUG, Culture Collection of the University of Goteborg, Goteborg, Sweden; University of Maryland, Centre for Vaccine Development, University of Maryland, Baltimore.
bNCBI RefSeq sequence.
cThis strain was sequenced previously using PacBio (accession number: GCF_001887455.1)8 but re-sequenced in this study.