Table 7.
Statistics of the gene models of the protein-coding genes annotated in the Vigna angularis (cultivar Longxiaodou 4) genome.
| Methods/Tools | Average transcript length (bp) | Average CDS length (bp) | Average Exons length (bp) | Average Introns length (bp) | Exon number per gene |
|---|---|---|---|---|---|
| Ab initio (Augustus) | 3,898 | 1,154 | 208 | 602 | 5.56 |
| Ab initio (Genscan) | 9,866 | 1,199 | 206 | 1,797 | 5.82 |
| Homolog (Abrus precatorius) | 5,183 | 953 | 273 | 1,698 | 3.49 |
| Homolog (Vigna radiata var radiata) | 2,891 | 828 | 284 | 1,079 | 2.91 |
| Homolog (Vigna angularis) | 3,722 | 980 | 288 | 1,144 | 3.4 |
| Homolog (Vigna unguiculata) | 1,029 | 589 | 449 | 1,420 | 1.31 |
| Homolog (Arachis hypogaea) | 1,184 | 749 | 546 | 1,170 | 1.37 |
| RNA-seq | 5,574 | 1,484 | 303 | 577 | 6.99 |
| BUSCO | 5,801 | 1,586 | 170 | 505 | 9.35 |
| MAKER | 5,597 | 1,337 | 254 | 726 | 6.45 |
| Final set | 4,564 | 1,265 | 281 | 614 | 5.79 |