TABLE 1.
Codon usage in HPV 16 -L1ori, L1h, L1p, L2ori, and L2h
| Amino acid | Codon | Frequency (%) of indicated codon in gene:
|
||||
|---|---|---|---|---|---|---|
| 16L2h | 16L2ori | 16L1h | 16L1p | 16L1ori | ||
| Ala | GCA | 0.0 | 3.0 | 0.0 | 0.2 | 2.8 |
| GCG | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | |
| GCC | 6.1 | 0.4 | 5.9 | 0.0 | 1.2 | |
| GCT | 0.0 | 2.7 | 0.0 | 5.7 | 2.0 | |
| Arg | AGA | 0.0 | 0.4 | 0.0 | 0.0 | 0.8 |
| AGG | 4.4 | 0.8 | 3.8 | 3.8 | 0.8 | |
| CGA | 0.0 | 0.6 | 0.0 | 0.0 | 0.8 | |
| CGG | 0.0 | 0.0 | 0.0 | 0.0 | 0.2 | |
| CGC | 0.0 | 1.1 | 0.0 | 0.0 | 0.8 | |
| CGT | 0.0 | 1.5 | 0.0 | 0.0 | 0.4 | |
| Asn | AAC | 3.8 | 0.4 | 5.5 | 0.0 | 1.4 |
| AAT | 0.0 | 3.4 | 0.0 | 5.5 | 4.2 | |
| Asp | GAC | 6.3 | 1.5 | 5.3 | 0.0 | 1.8 |
| GAT | 0.0 | 4.9 | 0.0 | 5.3 | 3.6 | |
| Cys | TGC | 0.4 | 0.2 | 2.4 | 0.0 | 0.6 |
| TGT | 0.0 | 0.2 | 0.0 | 2.4 | 1.8 | |
| Gln | CAA | 0.0 | 1.7 | 0.0 | 3.8 | 2.2 |
| CAG | 2.3 | 0.6 | 3.8 | 0.0 | 1.6 | |
| Glu | GAA | 0.0 | 2.1 | 0.0 | 3.8 | 2.8 |
| GAG | 2.1 | 0.0 | 4.0 | 0.2 | 1.2 | |
| Gly | GGA | 0.0 | 2.1 | 0.0 | 6.9 | 1.6 |
| GGG | 0.0 | 1.3 | 0.0 | 0.0 | 0.6 | |
| GGC | 6.8 | 0.8 | 6.9 | 0.0 | 1.8 | |
| GGT | 0.2 | 2.7 | 0.0 | 0.0 | 3.0 | |
| His | CAC | 1.7 | 0.2 | 2.0 | 0.0 | 0.4 |
| CAT | 0.0 | 1.5 | 0.0 | 2.0 | 1.6 | |
| Ile | ATA | 0.0 | 3.0 | 0.0 | 0.0 | 2.0 |
| ATC | 8.5 | 0.0 | 4.4 | 0.2 | 0.0 | |
| ATT | 0.0 | 5.5 | 0.0 | 4.2 | 2.4 | |
| Leu | CTA | 0.0 | 0.4 | 0.0 | 0.0 | 1.4 |
| CTG | 5.9 | 0.0 | 8.5 | 0.0 | 1.0 | |
| CTC | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | |
| CTT | 0.0 | 0.8 | 0.0 | 8.5 | 0.6 | |
| TTA | 0.0 | 3.8 | 0.0 | 0.0 | 4.6 | |
| TTG | 0.0 | 0.8 | 0.0 | 0.0 | 1.0 | |
| Lys | AAA | 0.0 | 2.5 | 0.0 | 6.7 | 5.3 |
| AAG | 3.0 | 0.4 | 6.7 | 0.0 | 1.4 | |
| Met | ATG | 0.8 | 0.8 | 2.0 | 2.0 | 2.0 |
| Phe | TTC | 3.2 | 0.2 | 4.8 | 0.0 | 0.2 |
| TTT | 0.0 | 3.0 | 0.0 | 4.8 | 4.6 | |
| Pro | CCA | 0.0 | 3.0 | 0.0 | 7.3 | 3.0 |
| CCG | 0.0 | 0.2 | 0.0 | 0.0 | 0.0 | |
| CCC | 10.6 | 1.7 | 7.3 | 0.0 | 1.0 | |
| CCT | 0.0 | 5.7 | 0.0 | 0.0 | 3.4 | |
| Ser | AGC | 9.7 | 0.4 | 6.5 | 0.0 | 0.4 |
| AGT | 0.0 | 2.5 | 0.0 | 0.0 | 1.4 | |
| TCA | 0.0 | 2.1 | 0.0 | 6.5 | 1.4 | |
| TCG | 0.0 | 0.4 | 0.0 | 0.0 | 0.0 | |
| TCC | 0.0 | 0.4 | 0.0 | 0.0 | 0.8 | |
| TCT | 0.0 | 3.8 | 0.0 | 0.0 | 2.6 | |
| Thr | ACA | 0.0 | 7.0 | 0.0 | 0.0 | 3.6 |
| ACG | 0.0 | 0.0 | 0.0 | 0.0 | 0.2 | |
| ACC | 13.7 | 1.3 | 8.1 | 0.0 | 1.6 | |
| ACT | 0.0 | 5.5 | 0.0 | 8.1 | 2.8 | |
| Trp | TGG | 0.0 | 0.0 | 1.4 | 1.4 | 1.4 |
| Tyr | TAC | 4.7 | 0.6 | 4.4 | 4.4 | 1.4 |
| TAT | 0.0 | 4.0 | 0.0 | 0.0 | 3.0 | |
| Val | GTA | 0.0 | 2.7 | 0.0 | 0.0 | 2.0 |
| GTG | 5.7 | 0.8 | 6.3 | 0.0 | 0.6 | |
| GTC | 0.0 | 0.2 | 0.0 | 0.0 | 0.4 | |
| GTT | 0.0 | 1.9 | 0.0 | 6.3 | 3.4 | |