| Commercial assay or kit |
Chemagic DNA Blood 100 kit |
PerkinElmer Chemagen Technologies GmbH |
|
|
| Software, algorithm |
Axiom Analysis Suite |
Thermo Fisher Scientific |
|
Version 4.0.3.3 |
| Software, algorithm |
PLINK |
Purcell et al., 2007; https://www.cog-genomics.org/plink/
|
RRID:SCR_001757
|
Version 1.9; v2 |
| Software, algorithm |
TOPMed Imputation Server |
https://imputation.biodatacatalyst.nhlbi.nih.gov/
|
|
Version 2 |
| Software, algorithm |
ADMIXTURE |
Alexander et al., 2009; https://dalexander.github.io/admixture/
|
RRID:SCR_001263
|
Version 1.3.0 |
| Software, algorithm |
SAIGEgds |
Zheng and Davis, 2021; https://www.bioconductor.org/packages/release/bioc/html/SAIGEgds.html
|
|
Version 1.10.0 |
| Software, algorithm |
METAL |
Willer et al., 2010; https://csg.sph.umich.edu/abecasis/metal/
|
RRID:SCR_002013
|
Version 2011-03-25 |
| Software, algorithm |
FUMA |
Watanabe et al., 2017; https://fuma.ctglab.nl/
|
RRID:SCR_017521
|
Version 1.5.2 |
| Software, algorithm |
MAMBA |
McGuire et al., 2021; https://github.com/dan11mcguire/mamba
|
|
Version 1 |
| Software, algorithm |
S-PrediXcan; S-MultiXcan |
Barbeira et al., 2018; https://github.com/hakyimlab/MetaXcan
|
RRID:SCR_016739
|
Version 1 |
| Software, algorithm |
GTEx v8 mashr prediction models |
https://predictdb.org/post/2021/07/21/gtex-v8-models-on-eqtl-and-sqtl/
|
|
|
| Other |
GWAS Catalog |
https://www.ebi.ac.uk/gwas/
|
RRID:SCR_012745
|
Section ‘Definition of the genetic risk loci and putative functional impact’ |
