Skip to main content
. 2024 Aug 12;20(10):1134–1150. doi: 10.1038/s44320-024-00060-7

Reagents and tools table

Reagent/resource Reference or source Identifier or catalog number
Software
yeast-GEM 9.0.0 https://github.com/SysBioChalmers/yeast-GEM
MATLAB R2021b https://www.mathworks.com/products/matlab.html
RAVEN 2.9.2 https://github.com/SysBioChalmers/RAVEN
COBRA 3.0.1 https://github.com/opencobra/cobratoolbox
python 3.9.7 https://www.python.org
cobrapy 0.22.1 https://github.com/opencobra/cobrapy
umap-learn 0.5.3 https://github.com/lmcinnes/umap
scikit-learn 0.24.2 https://scikit-learn.org
memote 0.13.0 https://github.com/opencobra/memote
scipy 1.7.1 https://scipy.org
numpy 1.20.3 https://numpy.org/
pandas 1.3.4 https://pandas.pydata.org