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[Preprint]. 2024 Sep 24:2024.09.22.24314165. [Version 2] doi: 10.1101/2024.09.22.24314165

Table 2.

Pancreatic gene regulatory elements significantly enriched with somatic mutations in PDAC

a. ACRs/CREs identified in purified pancreatic acinar cells enriched for somatic mutations

Regulatory elements ATAC-Seq H3K4me3 H3K4me1 H3K27ac H3K27me3 Super-enhancer
Number of elements tested 47,943 36,316 130,407 86,479 40,792 1,830
ActiveDriverWGS enriched elements 2 2 13 17 16 2
DriverPower enriched elements 1 0 2 5 0 0
b. ACRs/CREs identified in purified pancreatic ductal cells enriched for somatic mutations

Regulatory elements ATAC-Seq H3K4me3 H3K4me1 H3K27ac H3K27me3 Super enhancer

Number of elements tested 28,346 47,523 145,985 115,944 48,886 2,013
ActiveDriverWGS enriched elements 1 10 11 14 11 2
DriverPower enriched elements 0 4 2 1 0 0
c. ACRs/CREs identified in normal derived pancreatic cell lines enriched for somatic mutations

Regulatory elements ATAC-Seq H3K4me3 H3K4me1 H3K27ac H3K27me3 Super enhancer

Number of elements tested 110,559 202,545 341,357 289,299 33,325 2,469
ActiveDriverWGS enriched elements 5 10 15 12 11 1
DriverPower enriched elements 3 4 5 6 0 0
d. ACRs/CREs identified in PDAC cell lines enriched for somatic mutations

Regulatory elements ATAC-Seq H3K4me3 H3K4me1 H3K27ac H3K27me3 Super enhancer

Number of elements tested 134,666 215,439 380,899 443,624 39,164 3,800
ActiveDriverWGS enriched elements 1 18 25 55 32 0
DriverPower enriched elements 5 8 11 17 0 1

The number of accessible chromatin regions (ACRs) histone modification marks (HMMs) and super-enhancers (SE) identified in (a) purified primary pancreatic acinar cells, (b) primary ductal cells, (c) normal derived pancreatic cell lines and (d) PDAC cells that were used for the NCSM enrichment analysis. Likewise, the number of gene regulatory elements identified as enriched for somatic mutations as per ActiveDriverWGS and DriverPower analysis are listed.