Table 2.
a. ACRs/CREs identified in purified pancreatic acinar cells enriched for somatic mutations | ||||||
---|---|---|---|---|---|---|
| ||||||
Regulatory elements | ATAC-Seq | H3K4me3 | H3K4me1 | H3K27ac | H3K27me3 | Super-enhancer |
Number of elements tested | 47,943 | 36,316 | 130,407 | 86,479 | 40,792 | 1,830 |
ActiveDriverWGS enriched elements | 2 | 2 | 13 | 17 | 16 | 2 |
DriverPower enriched elements | 1 | 0 | 2 | 5 | 0 | 0 |
b. ACRs/CREs identified in purified pancreatic ductal cells enriched for somatic mutations | ||||||
| ||||||
Regulatory elements | ATAC-Seq | H3K4me3 | H3K4me1 | H3K27ac | H3K27me3 | Super enhancer |
| ||||||
Number of elements tested | 28,346 | 47,523 | 145,985 | 115,944 | 48,886 | 2,013 |
ActiveDriverWGS enriched elements | 1 | 10 | 11 | 14 | 11 | 2 |
DriverPower enriched elements | 0 | 4 | 2 | 1 | 0 | 0 |
c. ACRs/CREs identified in normal derived pancreatic cell lines enriched for somatic mutations | ||||||
| ||||||
Regulatory elements | ATAC-Seq | H3K4me3 | H3K4me1 | H3K27ac | H3K27me3 | Super enhancer |
| ||||||
Number of elements tested | 110,559 | 202,545 | 341,357 | 289,299 | 33,325 | 2,469 |
ActiveDriverWGS enriched elements | 5 | 10 | 15 | 12 | 11 | 1 |
DriverPower enriched elements | 3 | 4 | 5 | 6 | 0 | 0 |
d. ACRs/CREs identified in PDAC cell lines enriched for somatic mutations | ||||||
| ||||||
Regulatory elements | ATAC-Seq | H3K4me3 | H3K4me1 | H3K27ac | H3K27me3 | Super enhancer |
| ||||||
Number of elements tested | 134,666 | 215,439 | 380,899 | 443,624 | 39,164 | 3,800 |
ActiveDriverWGS enriched elements | 1 | 18 | 25 | 55 | 32 | 0 |
DriverPower enriched elements | 5 | 8 | 11 | 17 | 0 | 1 |
The number of accessible chromatin regions (ACRs) histone modification marks (HMMs) and super-enhancers (SE) identified in (a) purified primary pancreatic acinar cells, (b) primary ductal cells, (c) normal derived pancreatic cell lines and (d) PDAC cells that were used for the NCSM enrichment analysis. Likewise, the number of gene regulatory elements identified as enriched for somatic mutations as per ActiveDriverWGS and DriverPower analysis are listed.