. 2001 Oct;75(19):9532–9537. doi: 10.1128/JVI.75.19.9532-9537.2001

TABLE 1.

Amino acid sequence identity between alphavirus structural proteins^a

Virus	Identity with:
Virus	VEE	Sindbis	Semliki Forest	Ross River	Aura
VEE		51/40/54^b	52/37/56^b	53/39/51^b	50/40/56^b
Sindbis	34/58/47^c		50/40/44^b	50/42/44^b	62/57/59^b
Semliki Forest	35/63/51^c	42/67/56^c		78/68/71^b	48/38/53^b
Ross River	33/62/49^c	39/66/55^c	64/91/80^c		48/39/51^b
Aura	33/54/47^c	56/76/68^c	41/63/55^c	40/63/52^c

Protein sequences were obtained from Swiss-Protein database entries and correspond to the VEE (strain TC-83; accession number P05674), Sindbis (strain HRSP; accession number P03316), Semliki Forest (accession number P03315), Ross River (strain NB5092; accession number P13890), and Aura (accession number Q86925) viruses.

These values represent percent amino acid identify from separate best-fit pairwise alignments (W. Pearson, www.ch.embnet.org/software/LALIGN_form.html) of the E1, E2, and E3 proteins.

These values represent percent amino acid identify from separate best-fit pairwise alignments (W. Pearson, www.ch.embnet.org/software/LALIGN_form.html) of the CNR (residues 1 to ∼115), CCD, and the complete capsid protein.