TABLE 5.
Haplotypes determined by SSCP and verified by sequencing of two clones at select passages for nine lineages derived from LDSI-S10
| Gene | Founding inoculum LDSI-S10 (passage 0) | SSCP haplotypea for lineage:
|
||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Wheat
|
Corn
|
Barley
|
||||||||
| WA | WB | WC | CA | CB | CC | BA | BB | BC | ||
| P1 | Bb | B,B,B,B | B,B,B,B | B,B,B,B | B,B,B,B | E,E,E,E | B,B,A,B | B,B,B,B | B,B,B,B | B,B,B,B |
| HC-Pro | A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A |
| P3 | A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A |
| CI5′ | A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A | B,A,B,B | A,A,A,A | A,A,A,A | A,A,A,A |
| CI3′ | A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A | A,B,B,B | A,A,A,A |
| NIa | B | B,B,A,A | B,B,C,A | B,B,A,A | B,B,A,A | B,B,A,E | F,F,F,F | B,B,A,A | B,B,G,G | B,B,A,A |
| NIb | A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,A | A,A,A,G | A,A,B,B | A,A,C,A | A,A,A,A | A,A,A,A |
| CP | A | A,A,F,F | A,A,N,K | A,A,G,M | A,A,H,I | A,A,A,J | A,A,A,A | A,A,A,L | A,A,A,A | A,A,A,A |
a
Haplotypes are designated by letters; the four letters in each group are for passages 1, 3, 6, and 9, respectively. The underlines indicate haplotypes verified by sequencing of two clones.
b
LDSI-S10 is also known to contain P1 haplotype A as a minor variant.