Table 2.
Number of genes throughout the differential abundance (DA) workflow
| Environment | Number of genes before dereplication | Number of genes after dereplication (% of before) | Differentially abundant genes (% of dereplicated) | Virome-enriched genes (% of DA) | Metagenome-enriched genes (% of DA) |
|---|---|---|---|---|---|
| Human gut | 8.39 × 104 | 1.31 × 104 (16%) | 55 (0.004%) | 0 | 0 |
| Freshwater | 1.02 × 106 | 2.06 × 105 (20%) | 6.50 × 104 (32%) | 3.77 × 104 (58%) | 2.53 × 104 (39%) |
| Marine | 6.75 × 105 | 1.17 × 105 (17%) | 5.72 × 103 (4.9%) | 222 (3.9%) | 3.27 × 103 (57%) |
| Soil | 4.42 × 105 | 7.87 × 104 (18%) | 1.31 × 103 (1.7%) | 432 (33%) | 591 (45%) |
| Total | 2.22 × 106 | 4.15 × 105 (19%) | 7.21 × 104 (17%) | 3.83 × 104 (53%) | 2.92 × 104 (40%) |