TABLE 2.
JCV types used for phylogenetic analysisa
| Strain(s) | Origin (ethnicity)b | GenBank accession no(s). | Reference | Type |
|---|---|---|---|---|
| Mad-1 | United States (C) | J0227 | 16 | 1 |
| 124 | United States (C) | AF015526 | 4 | 1 |
| 123 | United States (C) | AF015227 | 4 | 1 |
| Tokyo-1 | Japan | AF030085 | 7 | 2A |
| 224 | United States (H) | AF015529 | 7 | 2A |
| 225 | United States (NA) | AF015530 | 7 | 2A |
| 226 | United States (NA) | AF015531 | 7 | 2A |
| 223 | United States (AA) | AF015532 | 7 | 2B |
| 227 | United States (C) | AF015533 | 7 | 2B |
| GS/K | Germany | AF004349 | 30 | 2B |
| GS/B | Germany | AF004350 | 30 | 2B |
| 228 | United States (NA) | AF015534 | 7 | 2C |
| 229 | United States (C) | AF015535 | 7 | 2C |
| 230 | United States (AA) | AF015536 | 7 | 2C |
| 308 | Tanzania | U73500 | 2 | 3 |
| 312 | United States (AA) | U73502 | 2 | 3 |
| 311 | United States (AA) | U73501 | 2 | 3 |
| 402 | United States (C) | AF015528 | 4 | 4 |
| 601 | United States (AA) | AF015537 | 6 | 6 |
| Tai-3 | Taiwan | U61771 | 35 | 7 |
| BCNU-2, -16, -8, -15 | Spain | AF119345–49 | 12 | |
| U3 | Sweden | AF119350 | 12 | |
| F2 | France | AF119351 | 12 | |
| P3, P1 | South Africa | AF119352–53 | 12 | |
| CSFB, -E, -J | Spain | AF119354–56 | 12 | |
| CSFK | Spain | AF304389 | This paper | |
| G1 | Greece | AF303943 | This paper | |
| E1–2 | Egypt | AF303944–45 | This paper | |
| W1–3/W4–6 | United States | AF303946–48/AF304386–88 | This paper |
a
Strains and genomes used to construct the phylogentic tree are represented. The geographic origins of the strains are shown. Some data are from the work of Jobes et al. (25).
b
C, Caucasian; H, Hispanic; NA, Native American; AA, African American.