Table 1.
Summary of known climatic adaptive phenotypes associated with RAOs
| Adaptive phenotype | Genes (A. thaliana paralogues) | Lowest FDR |
|---|---|---|
| Flowering time, development and photoperiodism | ATC/TSF/TFL1/BFT/FT | 0.347 |
| AT4G04260/EBS/SHL1 | 0.330 | |
| PDP5/PDP2 | 0.351 | |
| AHBP-1B/BF5/TGA6/PAN | 0.163 | |
| ELF9 | 0.330 | |
| GIGANTEA | 0.394 | |
| BRD1/BRD2 | 0.362 | |
| RVE1/RVE2/AT3G10113/EPR1 | 0.349 | |
| GPRI1/GLK2 | 0.305 | |
| CUL4 | 0.487 | |
| Circadian rhythm | PRR7/PRR3 | 0.102 |
| ATH13 | 0.352 | |
| RVE1/RVE2/AT3G10113/EPR1 | 0.349 | |
| GIGANTEA | 0.394 | |
| Auxin signalling | GH3.1/GH3.3/GH3.9/WES1/BRU6/DFL1/GH3.17/GH3.4 | 0.347 |
| UBQ7/AT1G11970/RUB3/RUB1 | 0.051 | |
| IAA33 | 0.379 | |
| PEX5 | 0.418 | |
| ABCG33/ABCG41/ABCG30/ABCG42/ABCG43/ABCG37 | 0.302 | |
| RVE1/RVE2/AT3G10113/EPR1 | 0.349 | |
| Salicylic acid signalling | AHBP-1B/OBF5/TGA6/PAN | 0.163 |
| Abscisic acid signalling | CIPK3/CIPK8/CIPK26/SOS2/CIPK9/CIPK23, SPP1 | 0.186 |
| Seed dormancy and vegetative timing | DRG | 0.307 |
| RPN8A/MEE34 | 0.362 | |
| GPS1 | 0.163 | |
| AT4G04260/EBS/SHL1 | 0.330 | |
| POD1 | 0.201 | |
| CPN60A/Cpn60alpha2 | 0.344 | |
| Root growth and development | ZP1 | 0.238 |
| ATSAC1B/RHD4/SAC8 | 0.349 | |
| ABCG33/ABCG41/ABCG30/ABCG42/ABCG43/ABCG37 | 0.302 | |
| BCHA2/SPI | 0.256 | |
| WAV2 | 0.256 | |
| GH3.1/GH3.3/GH3.9/WES1/BRU6/DFL1/GH3.17/GH3.4 | 0.347 | |
| HRD/AT5G52020/AT1G12630, ANL2/HDG1 | 0.174 | |
| Cold- and thermo-tolerance | CIPK3/CIPK8/CIPK26/SOS2/CIPK9/CIPK23 | 0.186 |
| HCF106 | 0.361 | |
| GIGANTEA | 0.394 | |
| HSF4 | 0.124 | |
| Salt stress | SOS1/NHX8, ANL2/HDG1 | 0.330 |
| CIPK3/CIPK8/CIPK26/SOS2/CIPK9/CIPK23 | 0.186 | |
| ATSAC1B/RHD4/SAC8 | 0.349 |