TABLE II.

Overridden parameters for Laue-DIALS wrappers. All DIALS parameters that are overridden by Laue-DIALS for wrapper programs. Valid as of DIALS v3.17.0 and Laue-DIALS v0.4.

Laue-DIALS	DIALS	Overridden parameters
laue.find_spots	dials.find_spots	spotfinder.force_2d=True
		output.shoeboxes=False
laue.index	dials.index	indexing.refinement_protocol.mode=repredict_only
		refinement.parameterisation.beam.fix=all
		refinement.parameterisation.detector.fix=all
		refinement.parameterisation.goniometer.fix=all
		refinement.reflections.outlier.algorithm=tukey
		refinement.reflections.outlier.tukey.iqr_multiplier=0
		refinement.reflections.minimum_number_of_reflections=1
	dials.refine	refinement.parameterisation.beam.fix=all
		refinement.parameterisation.crystal=cell
		refinement.parameterisation.detector.fix=orientation
		refinement.parameterisation.goniometer.fix=None
		refinement.parameterisation.scan_varying=True
		refinement.reflections.outlier.algorithm=tukey
		refinement.reflections.outlier.tukey.iqr_multiplier=0
		refinement.reflections.minimum_number_of_reflections=1
laue.refine	dials.refine	refinement.refinery.engine=SparseLevMar
		refinement.reflections.weighting_strategy.override=stills
		refinement.reflections.outlier.nproc=1
		refinement.reflections.outlier.minimum_number_of_reflections=1
		refinement.reflections.outlier.algorithm=mcd
		refinement.reflections.outlier.separate_images=True
		refinement.parameterisation.beam.fix=*in_spindle_plane *out_spindle_plane
		refinement.parameterisation.crystal.unit_cell.fix_list=real_space_a
		refinement.parameterisation.detector.fix=distance
		refinement.parameterisation.auto_reduction.action=fix
		refinement.parameterisation.auto_reduction.min_nref_per_parameter=1
		refinement.parameterisation.spherical_relp_model=True
		output.experiments=poly_refined.expt
		output.reflections=poly_refined.refl
		output.log=laue.poly_refined.log