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[Preprint]. 2024 Sep 25:2024.09.23.614545. [Version 1] doi: 10.1101/2024.09.23.614545

Table 1.

Experimental structures of integrin αVβ3 available in the Protein Data Bank

PDB ID Method Resolution (Å) Year (PDB) Ligand details Ref.
Name Metal Selectivity for αVβ3 Activity
1JV2 X-ray 3.10 2001 - Ca2+ 42
1L5G X-ray 3.20 2002 Cyclic RGD peptide (Cilengitide) Mn2+ Non-selective Partial agonist 36
1M1X X-ray 3.30 2002 - Mn2+ 36
1U8C X-ray 3.10 2004 - Ca2+ 43
3IJE X-ray 2.90 2009 - Ca2+ 44
4G1E X-ray 3.00 2012 - Ca2+ 45
4G1M X-ray 2.90 2012 - Ca2+ 45
4MMX X-ray 3.32 2013 The tenth domain of fibronectin (wtFn10) Mn2+ Selective Agonist 34
4MMY X-ray 3.18 2013 Fibronectin peptide (IAKGDWND motif) Mn2+ Selective Partial agonist 34
4MMZ X-ray 3.10 2013 The antagonistic tenth domain of Fibronectin (hFn10) Mn2+ Selective Antagonist 34
4O02 X-ray 3.60 2013 αV-specific antibody (17E6). Mn2+ Non-selective Antagonist 40
6AVQ Cryo-EM 35.00 2017 αVβ3 monoclonal antibody (LM609) - Selective Antagonist 41
6AVR Cryo-EM 35.00 2017 αVβ3 monoclonal antibody (LM609) - Selective Antagonist 41
6AVU Cryo-EM 35.00 2017 αVβ3 monoclonal antibody (LM609) - Selective Antagonist 41
6MK0 X-ray 3.00 2019 Inhibitor TDI-4161 Mn2+ Selective Antagonist 37
6MSL X-ray 3.10 2019 Knottin EETI-II 2.5D Mn2+ Selective Partial agonist 39
6MSU X-ray 3.11 2019 Knottin EETI-II 2.5F Mn2+ Non-selective Partial agonist 39
6NAJ X-ray 3.10 2019 Hr10 variant of 10th domain of fibronectin Mn2+ Antagonist 38