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. 2024 Sep 26;11:1470989. doi: 10.3389/fmolb.2024.1470989

TABLE 1.

Summary of bacterial non-hydrolyzing UDP-GlcNAc 2-epimerase structures in the PDB [modified after (Legg, 2022)].

PDB Identity to MnaA (%) Resolution Organism Conformation Catalytic site substrate Allosteric site substrate References
3BEO 67.2 1.70 Å Bacillus anthracis Closed UDP* UDP-GlcNAc Velloso et al. (2008)
1O6C 63.0 2.90 Å Bacillus subtilis Open Badger et al. (2005)
4FKZ 63.0 1.69 Å Bacillus subtilis Closed UDP* UDP-GlcNAc Structure released in 2013; no associated publication
3OT5 59.2 2.20 Å Listeria monocytogenes Open Structure released in 2010; no associated publication
5ENZ 58.0 1.91 Å Staphylococcus aureus Closed UDP* Mann et al. (2016)
1F6D 53.8 2.50 Å Escherichia coli Partially open UDP* Campbell et al. (2000)
1VGV 53.8 2.31 Å Escherichia coli Closed-liganded UDP-GlcNAc (Badger et al., 2005) *
3DZC 50.7 2.35 Å Vibrio cholerae Open Structure released in 2008; no associated publication
6VLB 48.1 1.85 Å Neisseria meningitidis Open Hurlburt et al. (2020)
6VLC 48.1 2.15 Å Neisseria meningitidis Closed UDP-GlcNAc Hurlburt et al. (2020)
5DLD 47.8 1.45 Å Burkholderia vietnamiensis Closed UDP* UDP-GlcNAc Structure released in 2015; no associated publication
1V4V 45.4 1.8 Å Thermus thermophilus Open Structure released in 2003; no associated publication
4NEQ 32.1 2.85 Å Methanocaldococcus jannaschii Open Chen et al. (2014)
4NES 32.1 1.42 Å Methanocaldococcus jannaschii Closed UDP* UDP-GlcNAc Chen et al. (2014)
4HWG 29.5 2.00 Å Rickettsia bellii Open Structure released in 2003; no associated publication
7VYY 38.9 2.44 Å Streptomyces kasugaensis Open Rattinam et al. (2022)
7VZA 38.9 2.58 Å Streptomyces kasugaensis Closed UDP* Rattinam et al. (2022)
7VZ6 38.9 2.09 Å Streptomyces kasugaensis Closed UDP-Glc Rattinam et al. (2022)

* Only the UDP component of UDP-GlcNAc substrate was modeled in the catalytic site of the indicated structures.