Table 2.

Microorganisms detected in bronchoalveolar lavage fluid of the index patient by mNGS

Microorgansims	Number of reads
Acinetobacter pittii	1,649,958
Streptococcus constellatus	68,863
Staphylococcus aureus	61,410
Talaromyces marneffei	200
Varicella zoster virus	21,541
Herpes simplex virus-1	3693
Epstein-Barr virus	773
Human herpes virus-7	273
Human herpes virus-6B	12
Torque teno virus	66
Cytomegalovirus	121
Streptococcus salivarius	598,829
Streptococcus oralis	184,690
Prevotella melaninogenica	702,644
Actinomyces graevenitzii	739,902
Peptostreptococcus stomatis	364,570
Neisseria elongate	54,683
Alloprevotella tannerae	214,813
Gemella morbillorum	142,707
Porphyromonas gingivalis	118,646
Solobacterium moorei	147,988
Candida parapsilosis	24