Table 2.
RStudio code and processed data deposited on figshare43.
| File name | Description |
|---|---|
| experimental_design.rds | Experimental design of proteomics experiment |
| experimental_design_phospho.rds | Experimental design of phosphoproteomics experiment |
| Proteome_Preprocessing.R | Code for preprocessing the proteomics data |
| Phospho_preprocessing.R | Code for preprocessing the phosphoproteomics data |
| intensities.rds | Normalized and imputed proteomics data |
| phospho.rds | Normalized and imputed phosphoproteomics data |
| SciDataRMD.rmd | Code for processing of normalized data |
| SciData R script.R | Code for processing of normalized data |