| Deposited data |
|
| Framingham Heart Study whole genome sequencing and RNAseq data |
Taliun et al.38
|
https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000974.v5.p4 |
| Framingham Heart Study extracellular microRNA qRT-PCR data and phenotypes data |
This paper |
https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs000007.v33.p14 |
| The NHGRI-EBI GWAS catalog |
Buniello et al.16
|
https://www.ebi.ac.uk/gwas/ |
| GWAS of standard blood platelet traits |
Chen et al.17
|
https://grasp.nhlbi.nih.gov/Overview.aspx |
| Combined Annotation Dependent Depletion (CADD) |
Rentzsch et al.39
|
https://cadd.gs.washington.edu/ |
|
| Software and algorithm |
|
| R |
N/A |
https://www.r-project.org/ |
| MR-seek |
Burgess and Thompson40
|
https://github.com/OpenOmics/mr-seek.git |
| GCTA-COJO |
Yang et al.41
|
https://yanglab.westlake.edu.cn/software/gcta |
| coloc |
Giambartolomei et al.42
|
https://chr1swallace.github.io/coloc/index.html |
| 'SVA' R package |
Leek et al.43
|
https://bioconductor.org/packages/release/bioc/html/sva.html |
| enrichR |
Kuleshov44
|
https://cran.r-project.org/web/packages/enrichR/index.html |
| Ensembl Variant Effect Predictor (VEP, version 109) |
Cingolani et al.45
|
https://useast.ensembl.org/info/docs/tools/vep/index.html |
| SnpEff 5.1.d (Build 2022-04-19) |
Cingolani et al.45
|
https://pcingola.github.io/SnpEff/snpeff/build_db/ |
| miRDB version 6.0 |
Chen and Wang46
|
https://mirdb.org/ |
