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. 2024 Oct 13;25(6):bbae506. doi: 10.1093/bib/bbae506

Table 1.

Software used in the workflow.

Software Purpose Link
ChimeraX Perform docking preparation of the retrieved proteins (albumin and Keratin-26). https://www.cgl.ucsf.edu/chimerax/download.html
EDock Perform blind protein–ligand docking between each chemical and each retrieved protein. https://zhanggroup.org/EDock/
HDock Perform protein–protein blind docking between the complexes with the beast docking scores and each TLR. http://hdock.phys.hust.edu.cn/
IEDB Predict potential epitopes from the complexes with the best docking scores. https://www.iedb.org/
UISS Simulate Th1/Th2/Th17 response and cytokine panels. https://combine-group.org/