Table 2.
tRNAArgACG-only species | S. pyogenes | |||
---|---|---|---|---|
(UACG) | (UACG and UAAG) | |||
Codon position of inosine | Amino acid | Codon | Amino acid | Codon |
C1 | Thr-to-Ala | ACG-to-ICG | Thr-to-Ala | ACG-to-ICG |
Lys-to-Glu | AAG-to-IAG | |||
C2 | Tyr-to-Cys | UAC-to-UIC | Tyr-to-Cys | UAC-to-UIC |
stop codon | UAA-to-UIA | |||
C3 | Leu | YUA-to-YUI | Leu | YUA-to-YUI |
[ Ile-to-Met ] | [ AUA-to-AUI ] | [ Ile-to-Met ] | [ AUA-to-AUI ] | |
[ Val ] | [ GUA-to-GUI ] | [ Val ] | [ GUA-to-GUI ] |
The possible outcomes of A-to-I editing in tRNAArgACG-only species, such as E. coli or K. pneumoniae (left), and S. pyogenes (right) are based on the minimum core consensus sequences of each species (in brackets, as reported in (21,23) and here) and listed according to the presence of inosine at the respective codon position (C1 to C3). Effects are shown at the amino acid and codon level. The editing events in square brackets contain the core consensus sequence but have no pyrimidine at position -2 relative to inosine and are therefore unfavoured.