Table 3.
Genetic clusters associated with secondary metabolite production on the Streptomyces LB8 strain genome.
| Region | Nucleotide | |||||
|---|---|---|---|---|---|---|
| Type | From | To | Most similar known cluster | Similarity | Associated function | |
| 1 | Redox-cofactor | 50,214 | 73,001 | – | – | – |
| 2 | NAPAA | 480,324 | 514,744 | Stenothricin | 13% | Antibiotic |
| 3 | Thiopeptide, LAP, siderophore | 1,569,742 | 1,605,016 | – | – | – |
| 4 | Lassopeptide | 1,807,832 | 1,830,430 | Chaxapeptin | 28% | Lassopeptides |
| 5 | Siderophore | 2,000,875 | 2,011,432 | - | - | - |
| 6 | Ectoine | 2,108,211 | 2,118,615 | Ectoine | 100% | Osmotic stress reaction |
| 7 | RiPP-like | 2,442,726 | 2,452,532 | – | – | – |
| 8 | T3PKS | 2,458,946 | 2,500,004 | Herboxidiene | 5% | Antibacterial, antitumor |
| 9 | Terpene | 3,025,566 | 3,049,031 | Carotenoid | 63% | Antibiotic (pigment) |
| 10 | Butyrolactone | 3,558,699 | 3,567,982 | Chondrochloren | 50% | Antibiotic (latam among others), antitumor, antifungal |
| 11 | T2PKS | 3,343,401 | 3,413,785 | Mayamycin | 72% | Antibiotic (macrolides), antitumor |
| 12 | Butyrolactone | 3,558,699 | 3,567,892 | Neocarzinostatin | 6% | Antitumor antibiotic |
| 13 | Betalactone, siderophore, lanthipeptide-class-i | 3,659,619 | 3,713,166 | Desferrioxamine | 83% | Antifungal, siderophores |
| 14 | NRPS-like, butyrolactone | 3,714,886 | 3,756,801 | Lactonamycin | 5% | Antibacterial |
| 15 | Lanthipeptide-class-I | 4,176,064 | 4,201,341 | – | – | – |
| 16 | PKS-like, T1PKS | 4,322,763 | 4,370,474 | Arsono-polyketide | 75% | Polyketide |
| 17 | NRPS, NAPAA, terpene | 4,773,300 | 4,816,581 | Stenothricin | 13% | Antibiotic (including lipopeptides) |
| 18 | T2PKS | 4,960,865 | 5,033,380 | Spore pigment | 83% | Antibiotic, antitumor, antifungal |
| 19 | RiPP-like | 5,835,922 | 5,884,571 | – | – | – |
| 20 | Butyrolactone | 5,472,550 | 5,483,563 | Cyphomycin | 6% | Antifungal, antiplasmodial |
| 21 | PKS-like | 5,835,922 | 5,884,571 | Sanglifehrin | 6% | Antibiotic, antitumor, immunosuppression |
| 22 | Terpene | 5,889,153 | 5,909,308 | Albaflavenone | 100% | Antibacterial |
| 23 | Terpene | 5,925,036 | 5,951,725 | Hopene | 53% | Antimicrobial and Antitumor |
Clusters unmatched with known clusters are denoted with “-.”