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. 2024 Sep 25;14(9):4665–4682. doi: 10.62347/KKLE8602

Figure 1.

Figure 1

Overall workflow. The pipeline includes the workflow of the experiment and the bioinformatic processes. In the process, raw data is initially filtered and then raw-mapped. Next, chimeric paired-end reads are selected for re-mapping of paired-end reads. HPV-aligned reads undergo re-mapping to locate the HPV integration sites. An in-house program is used to perform the paired-end reads assembly.