Table 1.
Gene | Nucleotide positionsa | Amino acid position in genea | Convergentamino acid mutationb | Mean number of amino acid mutations at codon site | Mean rate of amino acid change | Bayes factor of transition ratec | Posterior probability | Median jumpsd | Lower (2.5%)–Upper (97.5%) credible intervale |
---|---|---|---|---|---|---|---|---|---|
RRV | |||||||||
nsP1 | 821–823 | 248f | T to I | 37.100 | 0.999 | Inf | 1.0 | 21 | 14–26 |
nsP1 | 1400–1402 | 441f | K to E | 7.014 | 1.759 | 4827.2 | 1.0 | 4 | 3–7 |
E3 | 8554–8556 | 59 | G to R | 3.745 | 1.483 | 54.0 | 1.0 | 2 | 0–3 |
E2 | 9736–9738 | 389 | A to T | 2.184 | 1.357 | Inf | 1.0 | 2 | 2–3 |
E1 | 10 354–10 356 | 113 | I to V | 5.069 | 1.270 | Inf | 1.0 | 3 | 2–7 |
BFV | |||||||||
nsP1 | 951–953 | 297f | K to E | 5.964 | 1.930 | 2658.794 | 1.0 | 3 | 2–5 |
nsP1 | 1400–1402 | 447f | S to G | 4.122 | 1.091 | Inf | 1.0 | 4 | 4–5 |
nsP4 | 5772–5774 | 103 | V to A | 2.208 | 1.108 | Inf | 1.0 | 2 | 1–3 |
E3 | 8146–8148 | 21 | G to D | 3.635 | 1.127 | Inf | 1.0 | 2 | 1–5 |
E3 | 8254–8256 | 57 | T to M | 3.575 | 1.139 | 80.018 | 0.980 | 1 | 0–2 |
E2 | 8359–8361 | 24 | T to A | 2.161 | 1.097 | Inf | 1.0 | 2 | 2–3 |
E2 | 9129–9131 | 281 | A to V | 2.521 | 1.452 | Inf | 1.0 | 2 | 1–4 |
Nucleotide and aa sequence positions are numbered according to the prototype viruses, isolate T48 (GenBank accession number GQ433359) for RRV and isolate BH2193 (GenBank accession number U73745.1) for BFV.
Convergent aa mutations repeatedly observed in phylogenetic trees (Fig. 1).
Bayes factor statistical support (>3.2) for aa transition; Inf (infinity) was observed when the entire posterior included this rate as a parameter, such that the posterior odds were infinity and therefore also the Bayes factor.
Posterior median number of transition events (Markov jumps) for aa substitution.
Upper and lower bounds of the credible interval of the number of jumps.
Convergent mutations evolving under significant positive selection.