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. 2024 Sep 13;10(1):veae080. doi: 10.1093/ve/veae080

Table 1.

Evolving convergent RRV and BFV mutations with statistical support.

Gene Nucleotide positionsa Amino acid position in genea Convergentamino acid mutationb Mean number of amino acid mutations at codon site Mean rate of amino acid change Bayes factor of transition ratec Posterior probability Median jumpsd Lower (2.5%)–Upper (97.5%) credible intervale
RRV
nsP1 821–823 248f T to I 37.100 0.999 Inf 1.0 21 14–26
nsP1 1400–1402 441f K to E 7.014 1.759 4827.2 1.0 4 3–7
E3 8554–8556 59 G to R 3.745 1.483 54.0 1.0 2 0–3
E2 9736–9738 389 A to T 2.184 1.357 Inf 1.0 2 2–3
E1 10 354–10 356 113 I to V 5.069 1.270 Inf 1.0 3 2–7
BFV
nsP1 951–953 297f K to E 5.964 1.930 2658.794 1.0 3 2–5
nsP1 1400–1402 447f S to G 4.122 1.091 Inf 1.0 4 4–5
nsP4 5772–5774 103 V to A 2.208 1.108 Inf 1.0 2 1–3
E3 8146–8148 21 G to D 3.635 1.127 Inf 1.0 2 1–5
E3 8254–8256 57 T to M 3.575 1.139 80.018 0.980 1 0–2
E2 8359–8361 24 T to A 2.161 1.097 Inf 1.0 2 2–3
E2 9129–9131 281 A to V 2.521 1.452 Inf 1.0 2 1–4
a

Nucleotide and aa sequence positions are numbered according to the prototype viruses, isolate T48 (GenBank accession number GQ433359) for RRV and isolate BH2193 (GenBank accession number U73745.1) for BFV.

b

Convergent aa mutations repeatedly observed in phylogenetic trees (Fig. 1).

c

Bayes factor statistical support (>3.2) for aa transition; Inf (infinity) was observed when the entire posterior included this rate as a parameter, such that the posterior odds were infinity and therefore also the Bayes factor.

d

Posterior median number of transition events (Markov jumps) for aa substitution.

e

Upper and lower bounds of the credible interval of the number of jumps.

f

Convergent mutations evolving under significant positive selection.