| ABA | abscisic acid |
| AUX1 | auxin influx carrier protein 1 |
| AUX/IAA | auxin/indole-3-acetic acid |
| ARF | auxin response factor |
| BAM | beta-amylase |
| B-ARR | type-B Arabidopsis response regulator |
| BIN2 | brassinosteroid-insensitive 2 |
| BGL | beta-glucosidase |
| BRI1 | brassinosteroid insensitive 1 |
| BSK | BRI1 suppressor kinase |
| BZR1/2 | brassinazole resistant 1/2 |
| cDNA | complementary deoxyribonucleic acid |
| C_em | seeds before incubation |
| COI1 | coronatine-insensitive 1 |
| CRE1 | cytokinin response 1 |
| CTR1 | constitutive triple response 1 |
| CYCD3 | cyclin D3 |
| DEGs | differentially expressed genes |
| E3.2.1.67 | xylan 1,4-β-xylosidase |
| ETR | ethylene response 1 |
| FPKM | fragments per kilobase of transcript sequence per million base pairs sequenced |
| FRK | fructokinase |
| GAE | galacturonosyltransferase-like 1 |
| GAs | gibberellins |
| G_em | seeds after 40 °C incubation for 45 days |
| GO | Gene Ontology |
| GAUT1 | galacturonosyltransferase 1 |
| GDE | glycogen debranching enzyme |
| GlgB | glycogen branching enzyme |
| GlgC | glucose-1-phosphate adenylyltransferase |
| glgP | glycogen phosphorylase |
| GPI | glucose-6-phosphate isomerase |
| H_em | germinated seedlings after 32 °C incubation for 14 days |
| HC | hydrogen cyanamide |
| JAR1 | jasmonic acid resistant 1 |
| KEGG | Kyoto Encyclopedia of Genes and Genomes |
| KOG | eukaryotic orthologous groups |
| MGAM | maltase-glucoamylase |
| MYC2 | myelocytomatosis 2 |
| NCBI | National Center for Biotechnology Information |
| NGS | next-generation sequencing |
| NR | non-redundant protein |
| NT | nucleotide database |
| PE | pectinesterase |
| PFAM | Protein families database |
| PGM | phosphoglucomutase |
| PP2C | protein phosphatase 2C |
| PYR/PYL | pyrabactin resistance/pyrabactin resistance-like |
| qRT–PCR | quantitative reverse transcription polymerase chain reaction |
| RNA | ribonucleic acid |
| SEM | Scanning Electron Microscopy |
| SnRK2 | SNF1-related protein kinase 2 |
| SPS | sucrose-phosphate synthase |
| SS | starch synthase |
| SUS | sucrose synthase |
| TIR1 | transport inhibitor response 1 |
| TGA | TGA—binding factor |
| TPP | trehalose-6-phosphate phosphatase |
| TPS | trehalose-6-phosphate synthase |
| UGDH | UDP-glucose 6-dehydrogenase |
| UXS | UDP-glucuronic acid decarboxylase |
| xynB | xylanase B |