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. 2024 Oct 15;21:255. doi: 10.1186/s12985-024-02532-6

Table 2.

Sequence of intergenic regions (IGR) and transcriptional start and stop signals of Samak Micromys paramyxovirus 1 and 2

Genes Gene stop IGR Gene Start
SMPV-1 /N - CTT AGGAGCAAAG
N/P TTAAGAAAAA CTT AGGAACAAGG
P/M TTATAAAAAA CTT AGGAGTAAGG
M/F TTAAGAAAAA CTT AGGCACAAAG
F/SH ATACAAAAAA CTT AGGGAAAAAG
SH/TM CTAAGAAAAA CTT AGGGCAAATG
TM/G CTAAGAAAAA CTT AGGAGTAAAG
G/L TTAAGAAAAA CTT AGGATCAAAG
L/ TTAAGAAAAA - -
Consensus HTAHRAAAAA CTT AGGVNHAADG
SMPV-2 /N - CTT AGGGACAAAG
N/P TTAAGAAAAA CTT AGGATTAAAG
P/M TTAAGAAAAA CTT AGGAAGAAAG
M/F TTAGAAAAAA CTT AGGAGCAAAG
F/TM TAATAAAAAA CTT AGGGTCAATG
TM/G TTAAGAAAAA CTT AGGACTAATG
G/L TTATAAAAAA CTT AGGGACTAAC
L/ TTAAGAAAAA - -
Consensus - TWADRAAAAA CTT AGGRNBWAWS

Abbreviation SMPV-1, Samak Micromys paramyxovirus 1; SMPV-2, Samak Micromys paramyxovirus 2; N, nucleocapsid protein; P, phosphoprotein; M, matrix protein; F, fusion protein; SH, small hydrophobic protein; TM, transmembrane protein; G, glycoprotein; H, hemagglutinin protein; HN, hemagglutinin-neuraminidase protein; L, large protein