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. 2024 Oct 17;10:120. doi: 10.1038/s41540-024-00441-6

Fig. 1. The clusterCleaver workflow.

Fig. 1

Taking clustered single-cell RNA-sequencing data as input, clusterCleaver computes the EMD on predicted surface maker genes. Candidate surface marker genes are experimentally screened using flow cytometry, then surface staining antibodies which show subpopulation separation can be used to FACS isolate cell subpopulations. Transcriptomic identity of sorted cell subpopulations can be validated by performing bulk RNA-seq.