TABLE 1.
Defined set of useful reagents described in this study
| Reagent | Typea | Key features |
|---|---|---|
| pEVS104 | Plasmid | Conjugal helper plasmid that increases conjugation efficiency, does not replicate in recipient cells (37) |
| pTNS++ (pJMP8045) | Plasmid | pBBR1 origin replicating vector expressing Tn7 transposase genes, increases Tn7 transconjugant recovery in R. sphaeroides |
| pJMP8602 | Plasmid | Tn7 plasmid containing a promoterless mScarlet-I gene for testing promoter activity |
| PC | Promoter | Synthetic, IPTG-inducible promoter in R. sphaeroides and N. aromaticivorans |
| PD | Promoter | Synthetic, IPTG-inducible promoter in R. sphaeroides and N. aromaticivorans |
| PG | Promoter | Synthetic, IPTG-ducible promoter in R. sphaeroides and N. aromaticivorans |
| PO | Promoter | Synthetic, IPTG-inducible promoter in R. sphaeroides and N. aromaticivorans |
| PP | Promoter | Synthetic, IPTG-inducible promoter in R. sphaeroides and N. aromaticivorans |
| pJMP8921 | Plasmid | Mobile-CRISPRi plasmid containing mScarlet-I reporter, PD-sgRNA (BsaI/no spacer), and PC-dCas9 for testing system (no guide control) |
| pJMP8823 | Plasmid | Mobile-CRISPRi plasmid containing mScarlet-I reporter, PD-mScar1 sgRNA, and PC-dCas9 for testing system (mScarlet-I targeting guide) |
| pJMP8930 | Plasmid | Mobile-CRISPRi plasmid containing PD-sgRNA (BsaI/no spacer) and PC-dCas9 for cloning new sgRNA spacers |
| pJMP8923 | Plasmid | Mobile-CRISPRi plasmid containing mScarlet-I reporter, PD-sgRNA (BsaI/no spacer), and PG-dCas9 for testing system (no guide control) |
| pJMP8835 | Plasmid | Mobile-CRISPRi plasmid containing mScarlet-I reporter, PD-mScar1 sgRNA, and PG-dCas9 for testing system (mScarlet-I targeting guide) |
| pJMP8932 | Plasmid | Mobile-CRISPRi plasmid containing PD-sgRNA (BsaI/no spacer) and PG-dCas9 for cloning new sgRNA spacers |
See Fig. 2B and Table S15 for promoter sequences.