Table 1.
Genome statistics for the CS10 and BS3 de novo genome assemblies in comparison with the current reference assembly
| Samples | Genome size (Mb) | BUSCO64 scores (%) | No. contigs | N50 (kb) | N’s per 100 kb |
|---|---|---|---|---|---|
| CS10 | 773.1 | 90.7 | 3997 | 452.8 | 0 |
| 756.6 | 90.3 | 3228 | 472.4 | 0 | |
| BS3 | 779.2 | 92.4 | 3331 | 680.2 | 0 |
| 758.5 | 92.1 | 2725 | 661.8 | 0 | |
| Reference | 725.7 | 87.4 | 26 | 30,022.5 | 110.8 |
| 786.3 | 93.3 | 1697 | 29,845.7 | 118.4 |
Hap1 and hap2 are the two haplotype assemblies for the PacBio samples and their statistics are shown on the top and bottom row for each sample, respectively. In the case of the reference, the top row indicates assembly with scaffolded chromosomes, and the bottom row represents assembly with unplaced scaffolds in addition to the scaffolded chromosomes.