(a-i) Example Voltron2 fluorescence images (a,d,g), voltage traces of spiking neurons (b,e,h), and average spike SNR,
(c,f,i) at increasing imaging depths of 200 μm (a-c), 250 μm (d-f), and 300 μm (g-i) below the brain surface. Median spike SNR and are 6.37/0.081, 6.63/0.105, 6.08/0.078 for the active neurons shown in (b,e,h), respectively. See Supplementary Table 3 for a list of imaging parameters. Scale bars in (a,d,g) are 50 μm.
(j-l) Zoomed-in fluorescence traces from the shaded regions in (b,e,h).
(m) Raw fluorescence trace (non-inverted) of neuron 18 over the 1 min recording.
(n) Comparison of photobleaching rate measured at different imaging depths. Excitation power density at the brain surface was kept constant at 80 mW/mm2. The reduction in photobleaching rate with increasing imaging depth is caused by the reduction in excitation power received by the targeted neurons due to tissue scattering. Box plot same as Fig. 2(e). Wilcoxon rank sum test, p = 2.21e−1 for 130 − 199 vs. 200 − 249, p = 8.60e−2 for 130 − 199 vs. 250 − 300, p = 3.86e−2 for 200 − 249 vs. 250 − 300.