TABLE 2.
Mutant | Mutated sequencea | ATPase activity
|
Helicase activity
|
||
---|---|---|---|---|---|
kcat/Km (mM−1min−1) | % of wild-type activity | kcat/Km (mM−1min−1) | % of wild-type activity | ||
Motif I | |||||
WT 5′-1175 | AxxGxGKS | 2,693.6 | 100 | 2,737.6 | 100 |
A204V | VxxGxGKS | 2,491.7 | 93 | 1,966.1 | 72 |
K210Nc | AxxGxGNS | UDb | 0 | UD | 0 |
Motif II | |||||
WT 5′-1175 | DECH | 2,693.6 | 100 | 2,737.6 | 100 |
D290N | NECH | UD | 0 | UD | 0 |
E291A | DACH | 2,104.5 | 78 | 2,212.7 | 81 |
E291Q | DQCH | UD | 0 | UD | 0 |
C292A | DEAH | 1,423.2 | 53 | 2,252.4 | 82 |
H293A | DECA | 173.1 | 6 | 2,040.9 | 75 |
H293K | DECK | 1,173.7 | 44 | 1,793.7 | 66 |
H293Q | DECQ | 782.1 | 29 | 2,098.6 | 77 |
C292A/H293D | DEAD | UD | 0 | UD | 0 |
C292A/H293D/Q460H | DEAD/HRxGRxGR | UD | 0 | UD | 0 |
Motif III | |||||
WT 5′-1175 | TAT | 2,693.6 | 100 | 2,737.6 | 100 |
T322A | AAT | 804.1 | 30 | 1,699.5 | 62 |
T324A | TAA | 424.7 | 16 | 1,693.9 | 62 |
Motif VI | |||||
WT 5′-1175 | QRxGRxGR | 2,693.6 | 100 | 2,737.6 | 100 |
R461Q | QQxGRxGR | 200.5 | 7 | UD | 0 |
Nucleic acid interaction | |||||
WT 5′-1175 | V432/W501 | 2,693.6 | 100 | 2,737.6 | 100 |
V432A | A432 | 1,653.6 | 61 | 1,856.8 | 68 |
W501A | A501 | 2,140.5 | 79 | UD | 0 |
V432A + W501A | A432/A501 | 227.5 | 8 | UD | 0 |
Mutated residues are in boldface.
UD, undetectable.
The mutants that completely lose RNA helicase activity are K210N, D290N, E291Q, C292A/H293D, C292A/H293D/Q460H, R461Q, W501A, and V432A + W501A.