Extended Data Table 1. Parameter values for the full model (Eqn. 1).
Each parameter is listed with a brief explanation of its meaning and the values used for all simulations within this work. For parameters that were not assigned a specific value ( and ), a range is provided in closed brackets to indicate the sample space of values used for figure generation. The listed parameters were either inferred from a set of experimental data using a nonlinear optimization algorithm in MATLAB (Inferred), or manually chosen to be simple and symmetrical (Simple).
Parameter | Interpretation | Inferred | Simple |
---|---|---|---|
Maximum specific growth rate of | 0.7045 | 1 | |
Maximum specific growth rate of | 0.9517 | 1 | |
Saturation constant for glucose consumption by | 3.7551 | 10 | |
Saturation constant for glucose consumption by | 10.698 | 10 | |
Saturation constant for tyrosine consumption by | 20.867 | 10 | |
Saturation constant for phenylalanine consumption by | 8.6907 | 10 | |
Yield quotient for biomass from glucose | 1.2770 | 1 | |
Yield quotient for biomass from glucose | 3.5704 | 1 | |
Yield quotient for biomass from tyrosine | 43.302 | 10 | |
Yield quotient for biomass from phenylalanine | 39.073 | 10 | |
Maximum production rate of phenylalanine by | 80.364 | 20 | |
Maximum production rate of tyrosine by | 46.602 | 20 | |
D | Dilution rate of the chemostat | 0.2000 | |
Concentration of phenylalanine in the feedstock | [0, 200] | ||
Concentration of tyrosine in the feedstock | [0, 200] | ||
Concentration of glucose in the feedstock | 11.1111 |