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[Preprint]. 2024 Oct 17:2024.10.14.618235. [Version 1] doi: 10.1101/2024.10.14.618235

Extended Data Table 1. Parameter values for the full model (Eqn. 1).

Each parameter is listed with a brief explanation of its meaning and the values used for all simulations within this work. For parameters that were not assigned a specific value (R1,in and R2,in), a range is provided in closed brackets to indicate the sample space of values used for figure generation. The listed parameters were either inferred from a set of experimental data using a nonlinear optimization algorithm in MATLAB (Inferred), or manually chosen to be simple and symmetrical (Simple).

Parameter Interpretation Inferred Simple
μ1,max Maximum specific growth rate of ΔtyrA 0.7045 1
μ2,max Maximum specific growth rate of ΔpheA 0.9517 1
k13 Saturation constant for glucose consumption by ΔtyrA 3.7551 10
k23 Saturation constant for glucose consumption by ΔpheA 10.698 10
k12 Saturation constant for tyrosine consumption by ΔtyrA 20.867 10
k21 Saturation constant for phenylalanine consumption by ΔpheA 8.6907 10
q13 Yield quotient for ΔtyrA biomass from glucose 1.2770 1
q23 Yield quotient for ΔpheA biomass from glucose 3.5704 1
q12 Yield quotient for ΔtyrA biomass from tyrosine 43.302 10
q21 Yield quotient for ΔpheA biomass from phenylalanine 39.073 10
q11 Maximum production rate of phenylalanine by ΔtyrA 80.364 20
q22 Maximum production rate of tyrosine by ΔpheA 46.602 20
D Dilution rate of the chemostat 0.2000
R1,in Concentration of phenylalanine in the feedstock [0, 200]
R2,in Concentration of tyrosine in the feedstock [0, 200]
R3,in Concentration of glucose in the feedstock 11.1111