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[Preprint]. 2024 Oct 17:2024.10.14.618235. [Version 1] doi: 10.1101/2024.10.14.618235

Extended Data Table 3. Composition of microbial culture media.

Cultures were grown in either EZ Rich Defined Media (Teknova #M2105), MOPS Minimal Media (Teknova, #M2106), or MOPS Minimal Media with various spike in concentrations of tyrosine and/or phenylalanine. All media are chemically defined, and the exact composition is provided here. For the two columns that correspond with either EZ Rich Defined Media or MOPS Minimal Media, the letter O indicates the presence of a specific media component, while the letter X indicates the absence of a component.

Solution Component Concentration EZ Rich Minimal
Modified MOPS Buffer (Teknova, M2101) MOPS buffer 40 mM O O
Tricine (MW 179.2) 4 mM O O
Iron sulfate 0.01 mM O O
Ammonium chloride 9.5 mM O O
Potassium sulfate 0.276 mM O O
Calcium chloride 0.5 μM O O
Magnesium chloride 0.525 mM O O
Sodium chloride 50 mM O O
Ammonium molybdate 2.92E-07 mM O O
Boric acid 4.00E-05 mM O O
Cobalt chloride 3.02E-06 mM O O
Cupric sulfate 9.62E-07 mM O O
Manganese chloride 8.08E-06 mM O O
Zinc sulfate 9.74E-07 mM O O
ACGU Solution (Teknova, M2103) Potassium hydroxide 1.5 mM O O
Adenine 0.199 mM O O
Cytosine 0.199 mM O O
Uracil 0.199 mM O O
Guanine 0.199 mM O O
Supplement EZ (Teknova, M21024) L-alanine 0.8 mM O X
L-arginine HCL 5.2 mM O X
L-asparagine 0.4 mM O X
L-aspartic acid, potassium salt 0.4 mM O X
L-glutamic acid, potassium salt 0.6 mM O X
L-glutamine 0.6 mM O X
L-glycine 0.8 mM O X
L-Histidine HCl H2O 0.2 mM O X
L-isoleucine 0.4 mM O X
L-proline 0.4 mM O X
L-serine 10 mM O X
L-threonine 0.4 mM O X
L-tryptophan 0.1 mM O X
L-valine 0.6 mM O X
L-leucine 0.8 mM O X
L-lysine HCl 0.4 mM O X
L-methionine 0.2 mM O X
L-phenylalanine 0.4 mM O X
L-cysteine HCl 0.1 mM O X
L-tyrosine 0.2 mM O X
Thiamine HCl 0.01 mM O X
Calcium pantothenate 0.01 mM O X
p-Amino benzoic acid 0.01 mM O X
p-Hydroxy benzoic acid 0.01 mM O X
M2102 Potassium Phosphate Dibasic 1.32 mM O O
G0520 Glucose 11.11 mM O O