Extended Data Table 3. Composition of microbial culture media.
Cultures were grown in either EZ Rich Defined Media (Teknova #M2105), MOPS Minimal Media (Teknova, #M2106), or MOPS Minimal Media with various spike in concentrations of tyrosine and/or phenylalanine. All media are chemically defined, and the exact composition is provided here. For the two columns that correspond with either EZ Rich Defined Media or MOPS Minimal Media, the letter O indicates the presence of a specific media component, while the letter X indicates the absence of a component.
Solution | Component | Concentration | EZ Rich | Minimal |
---|---|---|---|---|
Modified MOPS Buffer (Teknova, M2101) | MOPS buffer | 40 mM | O | O |
Tricine (MW 179.2) | 4 mM | O | O | |
Iron sulfate | 0.01 mM | O | O | |
Ammonium chloride | 9.5 mM | O | O | |
Potassium sulfate | 0.276 mM | O | O | |
Calcium chloride | 0.5 μM | O | O | |
Magnesium chloride | 0.525 mM | O | O | |
Sodium chloride | 50 mM | O | O | |
Ammonium molybdate | 2.92E-07 mM | O | O | |
Boric acid | 4.00E-05 mM | O | O | |
Cobalt chloride | 3.02E-06 mM | O | O | |
Cupric sulfate | 9.62E-07 mM | O | O | |
Manganese chloride | 8.08E-06 mM | O | O | |
Zinc sulfate | 9.74E-07 mM | O | O | |
ACGU Solution (Teknova, M2103) | Potassium hydroxide | 1.5 mM | O | O |
Adenine | 0.199 mM | O | O | |
Cytosine | 0.199 mM | O | O | |
Uracil | 0.199 mM | O | O | |
Guanine | 0.199 mM | O | O | |
Supplement EZ (Teknova, M21024) | L-alanine | 0.8 mM | O | X |
L-arginine HCL | 5.2 mM | O | X | |
L-asparagine | 0.4 mM | O | X | |
L-aspartic acid, potassium salt | 0.4 mM | O | X | |
L-glutamic acid, potassium salt | 0.6 mM | O | X | |
L-glutamine | 0.6 mM | O | X | |
L-glycine | 0.8 mM | O | X | |
L-Histidine HCl H2O | 0.2 mM | O | X | |
L-isoleucine | 0.4 mM | O | X | |
L-proline | 0.4 mM | O | X | |
L-serine | 10 mM | O | X | |
L-threonine | 0.4 mM | O | X | |
L-tryptophan | 0.1 mM | O | X | |
L-valine | 0.6 mM | O | X | |
L-leucine | 0.8 mM | O | X | |
L-lysine HCl | 0.4 mM | O | X | |
L-methionine | 0.2 mM | O | X | |
L-phenylalanine | 0.4 mM | O | X | |
L-cysteine HCl | 0.1 mM | O | X | |
L-tyrosine | 0.2 mM | O | X | |
Thiamine HCl | 0.01 mM | O | X | |
Calcium pantothenate | 0.01 mM | O | X | |
p-Amino benzoic acid | 0.01 mM | O | X | |
p-Hydroxy benzoic acid | 0.01 mM | O | X | |
M2102 | Potassium Phosphate Dibasic | 1.32 mM | O | O |
G0520 | Glucose | 11.11 mM | O | O |