CRN	Chemical reaction network
GFP-LC3B	Green Fluorescent Protein fused with LC3
H2B-RFP	Histone H2B fused with Red Fluorescent Protein
ER	Endoplasmic Reticulum
Mdm2	Mouse double minute 2
mTOR	Mammalian target of rapamicyn
mTORC1	Mammalian target of rapamicyn complex 1
PERK	PKR-like endoplasmic reticulum kinase
JNK	Jun N-terminal kinase
UPR	unfolded protein response
ATF4	Activating Transcription Factor 4
BECN1	Beclin 1
BCL2	Beclin 2
eif2$\alpha$	eukaryotic translational initiation factor 2$\alpha$
ATG	autophagy-related gene
LC3B	Microtubule-associated proteins 1A/1B light chain 3B
ULK1	Unc-51-like autophagy-activating kinases
CHOP	C/EBP homologous protein
cAMP	Cyclic adenosine monophosphate
MAPK15	Mitogen-activated protein kinase 15
AC	Adenylyl cyclase
AKTA	active form of AKT
AMPK	AMP-activated protein kinase
ATG5t	truncated ATG5 (ATG5T)
BCL2	B-cell lymphoma 2
BCL2_BAX	BCL2 and BAX complex
PUMA	p53 upregulated modulator of apoptosis
BCL2_PUMA	BCL2 and PUMA complex
BID	BH3 interacting-domain death agonist
tBID	truncated BH3 interacting-domain death agonist
CA2ER	Ca ion concentration in the ER
CA2IC	Ca ion in the cytoplasm
CAMKK$\beta$	Calcium/calmodulin-dependent protein kinase kinase 2
DAPK	Death associated protein kinase 1
EPAC	exchange protein activated by cAMP
GPCRA	active from of G protein-coupled receptor
GA	G protein subunit $\alpha$
GBC	G protein subunit $\beta \gamma$
IP3	Inositol trisphosphate
PIP2	Phosphatidylinositol 4,5-bisphosphate
PKA	protein kinase A
PKC	protein kinase C
PLC$ϵ$	Inactive Phospholipase C epsilon 1
RHEBA	Active Ras Homolog Enriched In Brain
SERCA	Sarco/endoplasmic reticulum ${\mathrm{Ca}}^{2+}$-ATPase
TSC 1/2	Inactive tuberous sclerosis proteins 1 and 2
UVRAG	UV radiation resistance-associated gene protein
CYTCM	cytochrome c in the mitochondria
MTORA	active mammalian target of rapamicyn
STS	staurosporine