Table 3.

Omics data repositories. All links were accessed on 20 September 2024.

Omics	Data Repositories	Website	Reference
Genomics	Cell Collective	https://cellcollective.org/#	[134]
	EGA (European Genome-phenome Archive)	https://ega-archive.org/	[135]
	ENA (European Nucleotide Archive)	https://www.ebi.ac.uk/ena/browser/home	[136]
	EVA (European Variation Archive)	https://www.ebi.ac.uk/eva/	[137]
Transcriptomics	ArrayExpress	https://www.ebi.ac.uk/biostudies/arrayexpress	[138]
	dbGaP (database of Genotypes and Phenotypes)	https://www.ncbi.nlm.nih.gov/gap/	[139]
	ExpressionAtlas	https://www.ebi.ac.uk/gxa/home	[140]
	GEO (Gene Expression Omnibus)	https://www.ncbi.nlm.nih.gov/geo/	[141,142]
	SRA (Sequence Read Archive)	https://www.ncbi.nlm.nih.gov/sra	[143]
Proteomics	JPOST (Japan Proteome Standard) Repository	https://jpostdb.org/	[144]
	MassIVE (Mass Spectrometry Interactive Virtual Environment)	https://massive.ucsd.edu/ProteoSAFe/static/massive.jsp	[145]
	PaxDb (Protein Abundance Database)	https://pax-db.org/	[146]
	PeptideAtlas	https://peptideatlas.org/
	PRIDE	https://www.ebi.ac.uk/pride/archive/	[147]
	ProteomeXchange	https://www.proteomexchange.org/	[148]
	ProteomicsDB	https://www.proteomicsdb.org/	[149]
Metabolomics	HMDB (Human Metabolome Database)	https://hmdb.ca/	[150]
	MetaboLights	https://www.ebi.ac.uk/metabolights/	[151]
	Metabolomics Workbench	https://www.metabolomicsworkbench.org/	[152]