Table 2.
Five-Fold cross-validation performance of the three methods based on different descriptors.
Method | Descriptor(s) | AUC | Accuracy | Sensitivity | Specificity |
---|---|---|---|---|---|
RF | RDKit | 0.87 ± 0.02 | 0.81 ± 0.02 | 0.55 ± 0.04 | 0.93 ± 0.02 |
RF | RDKit + RLM | 0.89 ± 0.01 | 0.83 ± 0.01 | 0.62 ± 0.04 | 0.93 ± 0.01 |
XGBoost | RDKit | 0.87 ± 0.02 | 0.81 ± 0.02 | 0.65 ± 0.02 | 0.89 ± 0.02 |
XGBoost | RDKit + RLM | 0.89 ± 0.02 | 0.83 ± 0.01 | 0.70 ± 0.03 | 0.89 ± 0.02 |
GCNN | Graph | 0.84 ± 0.02 | 0.80 ± 0.02 | 0.57 ± 0.07 | 0.91 ± 0.03 |
GCNN | Graph + RDKit | 0.86 ± 0.02 | 0.80 ± 0.02 | 0.62 ± 0.07 | 0.89 ± 0.03 |
GCNN | Graph + RDKit + RLM | 0.87 ± 0.03 | 0.82 ± 0.02 | 0.67 ± 0.05 | 0.89 ± 0.02 |