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. 2024 Oct 4;5(10):101763. doi: 10.1016/j.xcrm.2024.101763
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Rabbit monoclonal anti-Merlin (D3S3W) Cell Signaling Technology Cat#12888S; RRID: AB_2650551
Rabbit monoclonal anti-LATS1(C66B5) Cell Signaling Technology Cat#3477S; RRID: AB_2133513
Rabbit monoclonal anti-LATS2(D83D6) Cell Signaling Technology Cat#5888S; RRID: AB_10835233
Rabbit monoclonal anti-SAV1(D6M6X) Cell Signaling Technology Cat#13301S; RRID: AB_2798176
Mouse monoclonal anti-WWC1 Zhang et al.74 N/A
Rabbit polyclonal anti-WWC2 Abcam Cat#ab126356; RRID: AB_11140331
Rabbit polyclonal anti-WWC3 Qi et al.30 N/A
Rabbit monoclonal anti-YAP(D8H1X) Cell Signaling Technology Cat#14074S; RRID: AB_2650491
Rabbit monoclonal anti-Vinculin(E1E9V) Cell Signaling Technology Cat#13901S; RRID: AB_2728768
Rabbit monoclonal anti-Phospho-YAP(Ser127) Cell Signaling Technology Cat#13008; RRID: AB_2650553
Rabbit monoclonal anti-Non-phospho(Active) YAP(Ser127)(E6U8Z) Cell Signaling Technology Cat#29495; RRID: AB_2798974
Rabbit polyclonal anti-CYR61(H-78) Santa Cruz Biotechnology Cat#sc-13100; RRID: AB_2088733
Rabbit polyclonal anti-Ki67 Abcam Cat#ab15580; RRID: AB_443209
Mouse monoclonal anti-YAP1(63.7) Santa Cruz Biotechnology Cat#sc-101199; RRID: AB_1131430
Rabbit monoclonal anti-WT1 Cell Signaling Technology Cat#83535; RRID: AB_2800020
Rabbit polyclonal anti-Mesothelin Thermo Fisher Scientific Cat#PA5-79698; RRID: AB_2746813
Rabbit monoclonal anti-Flag tag (D6W5B) Cell Signaling Technology Cat#14793S; RRID: AB_2572291
Mouse monoclonal anti-FLAG M2(HRP conjugated) Sigma-Aldrich Cat#A8592; RRID: AB_439702
Rabbit monoclonal anti-Phospho-LATS1(Thr1079)(D57D3) Cell Signaling Technology Cat#8654S; RRID: AB_10971635
Mouse monoclonal anti-Myc Tag MBL International Cat#M192-3; RRID: AB_11160947
Mouse monoclonal anti-GAPDH(HRP conjugated) Abways Technology Cat#AB2000
Goat polyclonal anti-CTGF(L-20) Santa Cruz Biotechnology Cat#sc-14939; RRID: AB_638805
Goat anti-rabbit IgG antibody, Alexa Fluor 488 Thermo Fisher Scientific Cat#A11001; RRID: AB_2534069

Bacterial and virus strains

Trans5α Chemically Competent Cell TransGen Biotech Cat#CD201-01
pLVX lentivirus This paper N/A
LentiCRISPR v2 Sanjana et al.75 Addgene 52961
Adeno-Cre HANBIO Cat#HBAD-1010
Adeno-associated virus (AAV) This paper N/A

Chemicals, peptides, and recombinant proteins

DAPI Sigma-Aldrich Cat#D9542
Fetal bovine serum Invitrogen Cat#10091-148
Protease inhibitor cocktail MCE Cat#HY-K0010
Phosphatase inhibitor Cocktail I MCE Cat#HY-K0021
Phosphatase inhibitor Cocktail II MCE Cat#HY-K0022
Phosphatase inhibitor Cocktail II MCE Cat#HY-K0022
PEI Polysciences Cat#23966-2
PolyJet Signagen Laboratories Cat#SL100688
Envision anti-Rabbit DAKO Cat#K4002
DAB reagent GeneTech GK500705
Prime STAR Max DNA polymerase Takara Cat#R045A
VT103 Selleck Cat#E1598
VT107 Selleck Cat#E1599

Critical commercial assays

TaKaRa MiniBEST Universal RNA Extraction Kit Takara Cat#9767
TB Green® Premix Ex Taq™ (Tli RNaseH Plus) Takara Cat#RR420A
TransScript® First-Strand cDNA Synthesis SuperMix TransGen Biotech Cat#AT301-03
ClonExpress MultiS One Step Cloning Kit Vazyme Cat#C113-02
High-sig ECL Western Blotting Tanon Car#180-501
Cell Counting Kit(CCK-8) YEASEN Cat#40203ES60

Deposited data

TCGA Mesothelioma data Hmeljak et al.42 https://portal.gdc.cancer.gov/projects/TCGA-MESO, dbGap Study Accession:phs000178.v11.p8

Experimental models: Cell lines

Human: HEK293A Yu et al.76 N/A
Human: HEK293T National collection of Authenticated Cell Cultures Cat#SCSP-502
Human: NCI-H2452 Tang et al.51 N/A
Human: NCI-H2373 Tang et al.51 N/A
Human: NCI-H2052 Tang et al.51 N/A
HEK293A NF2 KO Qi et al.30 N/A

Experimental models: Organisms/strains

Mouse: Nf2fl/fl (C57/BL6J background) Wang et al.77 N/A
Mouse: Savfl/fl(C57/BL6J background) Ji et al.78 N/A
Mouse: Wwc1fl/fl;Wwc2fl/fl (C57/BL6J background) Qi et al.31 N/A
Mouse: Nf2fl/fl;Savfl/fl (C57/BL6J background) Qi et al.31 N/A
Mouse: Nf2fl/fl;Wwc1fl/fl;Wwc2fl/fl (C57/BL6J background) Qi et al.31 N/A
Mouse: Nf2fl/fl;Trp53fl/fl (C57/BL6J background) This paper N/A
Mouse: Nf2fl/fl;Trp53fl/fl;Wwc1fl/fl;Wwc2fl/fl (C57/BL6J background) This paper N/A
Mouse: SuperHippofl/fl (C57/BL6J background) Qi et al.30 N/A
Mouse: Nf2fl/fl;Trp53fl/fl;SuperHippofl/+ (C57/BL6J background) This paper N/A

Oligonucleotides

WWC1 siRNA: 5′-GGUUGGAGAUUACUUCAUAGA-3′ This paper N/A
WWC2 siRNA: 5′-GGAUCUUCAUCCAGUACUAAA-3′ This paper N/A
WWC3 siRNA: 5′-GGAUAUUCAACAAAUACAAAG-3′ This paper N/A
RT-qPCR primer GAPDH forward 5′-ATGGGGAAGGTGAAGGTCG-3′ This paper N/A
RT-qPCR primer GAPDH reverse 5′- GGGGTCATTGATGGCAACAATA-3′ This paper N/A
RT-qPCR primer CTCF forward 5′- CCAATGACAACGCCTCCTG-3′ Yu et al.76 N/A
RT-qPCR primer CTCF reverse 5′- TGGTGCAGCCAGAAAGCTC-3′ Yu et al.76 N/A
RT-qPCR primer CYR61 forward 5′- AGCCTCGCATCCTATACAACC-3′ Yu et al.76 N/A
RT-qPCR primer CYR61 reverse 5′- TTCTTTCACAAGGCGGCACTC-3′ Yu et al.76 N/A
RT-qPCR primer ANKRD1 forward 5′- CACTTCTAGCCCACCCTGTGA-3′ Yu et al.76 N/A
RT-qPCR primer ANKRD1 reverse 5′- CCACAGGTTCCGTAATGATTT-3′ Yu et al.76 N/A

Recombinant DNA

pLVX-puro vector Takara #632164
PsPAX2 Didier Trono Addgene #12260
pMD.2g Didier Trono Addgene #12259
AAV2/6-CMV-3xFLAG-SuperHippo-P2A-NF2-WPRE This paper N/A
AAV2/6-CMV-3xFLAG-NF2-WPRE This paper N/A
AAV2/6-CMV-3xFLAG-SuperHippo-WPRE This paper N/A

Software and algorithms

GraphPad Prism 8 GraphPad https://www.graphpad.com/scientific-software/prism/
ImageJ NIH https://imagej.nih.gov/ij/
R (version 3.6.2) Open Source https://www.r-project.org/