Antibodies |
|
IMPDH Antibody (F-6) |
Santa Cruz |
Cat#sc-166551; RRID:AB_2127354 |
mouse anti-GAPDH |
Abcam |
Cat#ab8245; RRID:AB_2107448
|
APC-conjugated anti-human TRA-1-85 (CD147) |
Miltenyi Biotec |
Cat#130-128-900; RRID:AB_2921968 |
HRP conjugated secondary anti mouse |
BioRad |
Cat#1706516; RRID:AB_11125547
|
|
Bacterial and virus strains |
|
NEB Stable Competent E. coli |
NEB |
C3040 |
|
Biological samples |
|
MDA-MB-231 |
ATCC |
Cat#HTB-26 |
Normal human astrocytes |
Lonza Bioscience |
Discontinued |
HEK293T |
ATCC |
Cat#CRL-11268 |
|
Chemicals, peptides, and recombinant proteins |
|
Mycophenlic acid |
Tocris |
Cat#1505 |
PrestoBlue Cell Viability Reagent |
ThermoFisher Scientific |
Cat#A13261 |
SYTOX™ Green Nucleic Acid Stain |
Invitrogen |
Cat#S7020 |
Incucyte® Nuclight Rapid Red Dye for Live-Cell Nuclear Labeling |
Sartorius |
Cat#4717 |
7AAD Viability dye |
Beckman Coulter |
Cat#A07704 |
Liberase Blendzyme 3 |
Millipore Sigma |
Cat#5401119001 |
Heparin Solution |
|
Cat#07980 |
Human Recombinant Basic Fibroblast Growth Factor (bFGF) |
STEMCELL Technologies |
Cat#78003 |
Human Recombinant Epidermal Growth Factor (EGF) |
STEMCELL Technologies |
Cat#78006 |
Antibiotic-Antimycotic (100X) |
Wisent Bioproducts |
Cat#450-115-EL |
Lipofectamine 3000 |
ThermoFisher |
Cat#L3000075 |
Fetal Bovine Serum, heat inactivated (FBS) |
Wisent |
Cat#098-150 |
PBS |
ThermoFisher |
Cat#10010049 |
DMEM |
ThermoFisher |
Cat#11995073 |
EDTA |
Millipore Sigma |
Cat#20158 |
Guanine |
Sigma-Aldrich |
Cat#G11950
|
Paraformaldehyde |
Electron Microscopy Biosciences |
Cat#RT15700 |
D-firefly luciferin potassium salt |
Perkin Elmer |
Cat#122799 |
|
Critical commercial assays |
|
Bradford Assay |
BioRad |
Cat#5000112 |
|
Deposited data |
|
Lung-brain metastasis RNA seq data |
Gene Expression Omnibus |
GSE110495 |
Breast- and melanoma-brain metastasis RNA seq data |
Gene Expression Omnibus |
GSE220156 |
Metabolomics data |
FigShare |
https://doi.org/10.6084/m9.figshare.22246258 |
|
Experimental models: Cell lines |
|
Patient-dervied BM lines |
This manuscript |
N/A |
Neural Stem Cells |
This manuscript |
N/A |
CRUK0748, CRUK0733 |
Provided by Prof. Charles Swanton |
N/A |
|
Experimental models: Organisms/strains |
|
NOD-scid IL2Rgammanull (NSG) Mouse |
The Jackson Laboratory |
RRID:IMSR_JAX:005557 |
|
Recombinant DNA |
|
pMD2.G |
Addgene |
Cat#12259; RRID:Addgene_12259 |
psPAX2 |
Addgene |
Cat#12260; RRID:Addgene_12260 |
Toronto KnockOut (TKO) CRISPR Library - Version 3 |
Addgene |
Cat#:90294; RRID:Addgene_52961 |
Firefly Luciferase |
Addgene |
RRID:Addgene_118017 |
|
Software and algorithms |
|
Image Scope |
Aperio |
https://aperio-imagescope.software. informer.com
|
Living Image |
Perkin Elmer |
https://www.perkinelmer.com/es/lab-products-and-services/resourcesin-vivo-imaging-software-downloads.html |
R |
The R project for Statistical Computing |
https://www.r-project.org/ |
GraphPad Prism |
Graph Pad |
https://www.graphpad.com/ |
ImageJ |
NIH |
https://imagej.nih.gov/ |
FlowJo v10.8 |
FlowJo LLC |
https://www.flowjo.com/ |
BioRender |
BioRender |
https://biorender.com/ |
ELDA: Extreme Limiting Dilution Analysis |
Walter+Eliza Hall Bioinformatics -Insitute of Medical Research |
https://bioinf.wehi.edu.au/software/elda/ |
Aperio ScanScope |
Leica Biosystems |
N/A |
FLUOstar Omega Fluorescence 556 Microplate reader |
BMG labtech |
N/A |
|
Other |
|
10 mL Hamilton syringe |
Hamilton |
Cat#76350-01 |
NeuroCult NS-A Proliferation Kit |
Stem Cell Technologies |
Cat#05751 |