KEY RESOURCES TABLE

REAGENT or RESOURCE	SOURCE	IDENTIFIER
Antibodies
Pneumococcal serotype multiplex in-house assay (PCV13-MIA)	RIVM, the Netherlands, Elberse et al., 2010	IIV-IMS-MO22-MIA Pneumo
Biotinylated Anti-Human IgG (gamma) Antibody	KPL, Gaithersberg Maryland	Cat# 16-10-02; RRID:AB_2732814
Biotinylated Anti-Human IgA (alpha chain) Antibody	KPL, Gaithersberg Maryland	Cat# 16–10-01; RRID:AB_2732815
Bacterial and Virus Strains
Rotavirus antigen, supernatant from clarified Rotarix extract (~106 FFU/ml), Rotarix-infected MA104 cell cultures are clarified by centrifugation.	CDC, Atlanta, GA	N/A
Biological Samples
Rabbit hyperimmune serum to Rhesus rotavirus	CDC, Atlanta, GA	CD 08, 10–5-01
Chemicals, Peptides, and Recombinant Proteins
Extravidin	Sigma Aldrich, St Louis, MO (Sigma-Aldrich, RRID:SCR_008988	Cat# E2886, ExtrAvidin FITC, Sigma-Aldrich; RRID:SCR_013728
Critical Commercial Assays
ProspecT Rotavirus microassay	Thermo Fischer Scientific, Oxoid, UK	Cat# R240396; RRID:AB_2732820
anti-Tetanus Toxoid IgG Enzyme Immunoassay Kit	The Binding Site, Birmingham, England (Binding Site, RRID:SCR_004051)	Cat# MK010; RRID:AB_2732816
anti-PCP IgG Enzyme Immunoassay Kit	The Binding Site, Birmingham, England (Binding Site, RRID:SCR_004051)	Cat# MK012; RRID:AB_2732817
Deposited Data
Sequence data	This paper	ENA Accession Number PRJEB25634
Full analysis workflows for microbiome dada2 ASV resolution, statistical analysis and plotting	This paper	https://github.com/shandley/human_volunteer_rotabiome
Software and Algorithms
Prism7 software	Graphpad, San Diego, CA	Version 7.0c; RRID:SCR_002798
RStudio	RStudio, Inc	Version 1.0.143; RRID:SCR_000432
PhyloSeq	McMurdie and Holmes, 2013	https://joey711.github.io/phyloseq/; RRID:SCR_013080
Dada2	Callahan et al., 2016	https://github.com/benjjneb/dada2; RRID:SCR_008205