Table 1.
Data type, source, and number of biosamples of enhancer markers
| Marker | Data type | Data source | No. of biosamples | Ref. |
|---|---|---|---|---|
| Chromatin accessibility | ATAC-seq/DNase-seq | Cistrome | 371 | [22] |
| H3K27ac | ChIP-seq | Cistrome | 555 | [22] |
| H3K4me1 | ChIP-seq | Cistrome | 364 | [22] |
| RNAPII binding | ChIP-seq | Cistrome | 166 | [22] |
| FANTOM5 enhancer | – | FANTOM5 | – | [19] |
| SCREEN enhancer | – | SCREEN | – | [20] |
| EnhancerAtlas enhancer | – | EnhancerAtlas 2.0 | 197 | [18] |
| Super-enhancer | – | SEdb 2.0 | 1705 | [17] |
Note: ATAC-seq, assay for transposase-accessible chromatin using sequencing; DNase-seq, DNase I hypersensitive site sequencing; ChIP-seq, chromatin immunoprecipitation sequencing; RNAPII, RNA polymerase II; FANTOM5, functional annotation of the mammalian genome 5; ENCODE, ENCyclopedia of DNA Elements; SCREEN, Search Candidate cis-Regulatory Elements by ENCODE; SEdb, super-enhancer database.