Table 1.
Gene annotations available for various published cannabis genomes.
Cultivar | Annotation | Type | Genome assembly | RNA-Seq/transcripts dataset | Method | Reference |
---|---|---|---|---|---|---|
Cannabis sativa (CBDRx, cs10) | CS10 | gene, mRNA | GCF_900626175.2 | NCBI RefSeq | RefSeq | |
Cannabis sativa (Purple Kush, pkv5) | PKGMv1 | gene, mRNA | GCA_000230575.5 | GeneMark EP gene prediction, best hit blastp with NCBI NR | [11] | |
Cannabis sativa (Purple Kush, pkv5) | PKFDv1 | gene, mRNA | GCA_000230575.5 | PRJNA73819 (SRR352195, SRR352196, SRR352198, SRR352200, SRR352201, SRR352202, SRR352203, SRR352205, SRR352208, SRR352210) | FINDER This study (protocol steps 2–3) |
This study [11] |
Cannabis sativa (Finola, fnv2) | FNFDv1 | gene, mRNA | GCA_003417725.2 | PRJNA73819 (SRR351932, SRR351933) PRJNA483805 (SRR7630400-SRR7630408) | FINDER This study (protocol steps 2–3) |
This study [11, 55] |
(CBDRx, cs10) | cs10g21t | gene, mRNA | GCF_900626175.2 | 21 Trichomes | This study (protocol step 4) | This study [54–57] |
Cannabis sativa (Purple Kush, pkv5) | Csativa | mRNA | Assembled transcripts from canSat3_transcriptome-representative.fa.gz | [11] | ||
Cannabis sativa (Finola, fnv2) | Csativa | mRNA | Assembled transcripts from finola1_transcriptome-representative.fa.gz | [11] | ||
Cannabis sativa L. | Csativa | mRNA | No specific assembly | C sativa mRNAs from NCBI Genes |