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. 2024 Oct 18;2024:gigabyte137. doi: 10.46471/gigabyte.137

Table 1.

Gene annotations available for various published cannabis genomes.

Cultivar Annotation Type Genome assembly RNA-Seq/transcripts dataset Method Reference
Cannabis sativa (CBDRx, cs10) CS10 gene, mRNA GCF_900626175.2 NCBI RefSeq RefSeq
Cannabis sativa (Purple Kush, pkv5) PKGMv1 gene, mRNA GCA_000230575.5 GeneMark EP gene prediction, best hit blastp with NCBI NR [11]
Cannabis sativa (Purple Kush, pkv5) PKFDv1 gene, mRNA GCA_000230575.5 PRJNA73819  (SRR352195, SRR352196, SRR352198, SRR352200, SRR352201, SRR352202, SRR352203, SRR352205, SRR352208, SRR352210) FINDER
This study (protocol steps 2–3)
This study [11]
Cannabis sativa (Finola, fnv2) FNFDv1 gene, mRNA GCA_003417725.2 PRJNA73819  (SRR351932, SRR351933) PRJNA483805  (SRR7630400-SRR7630408) FINDER
This study (protocol steps 2–3)
This study [11, 55]
(CBDRx, cs10) cs10g21t gene, mRNA GCF_900626175.2 21 Trichomes This study (protocol step 4) This study [5457]
Cannabis sativa (Purple Kush, pkv5) Csativa mRNA Assembled transcripts from canSat3_transcriptome-representative.fa.gz [11]
Cannabis sativa (Finola, fnv2) Csativa mRNA Assembled transcripts from finola1_transcriptome-representative.fa.gz [11]
Cannabis sativa L. Csativa mRNA No specific assembly C sativa mRNAs from NCBI Genes