Table 2. Gap repair efficiency in exo1, mre11 and rad1 strains.
Relevant genotype | Transformants /µg ×104 uncut pSB110 | pSB110a gap repair (×10–2)b | Fold increase | pSB110a gap repair (×10–2)b | Fold increase | Gene replacement (×10–3)c | Fold increase |
---|---|---|---|---|---|---|---|
EXO1 MRE11 RAD1 | 17.6 ± 2.8 | 24.3 ± 7.4 | 4.4 ± 1.3 | 8.2 ± 1.6 | |||
exo1Δ | 16.2 ± 0.8 | 46.3 ± 9.6 | 1.9 | 9.8 ± 3.0 | 2.2 | 23.1 ± 2.9 | 2.8 |
mre11Δ | 4.4 ± 1.8 | 7.4 ± 2.8 | 0.3 | 0.41 ± 0.1 | 0.09 | 21.9 ± 7.7 | 2.7 |
mre11-H125N | 19.1 ± 6.5 | 18.4 ± 5.4 | 0.8 | NDd | ND | ||
rad1Δ | 13.2 ± 3.9 | 16.0 ± 5.0 | 0.7 | 1.9 ± 0.8 | 0.4 | 2.6 ± 1.1 | 0.3 |
exo1Δ mre11Δ | 0.9 ± 0.6 | 2.8 ± 1.6 | 0.1 | 0.08 | 0.02 | ND | |
rad1Δ mre11Δ | 3.3 ± 1.6 | 4.8 ± 1.6 | 0.2 | 0.26 ± 0.03 | 0.06 | ND |
apSB110 is ARS+; pSB101 contains no ARS element.
bGap repair frequencies were determined by the number of Ura+ Met+ transformants obtained from the gapped plasmid divided by the number of Ura+ Met+ transformants obtained from an equivalent amount of uncut pSB110 DNA.
cGene replacement frequencies were determined by the number of Met+ transformants obtained from the MET17 fragment divided by the number of Met+ transformants obtained from an equivalent amount of uncut pSB110 DNA.
dND, not determined.