TABLE 2.
Results of BLAST search showing reported homology of ORFs and intergenic regions of KSF-1 phage with those of other phages or bacteria
| ORF/intergenic region | Nucleotide position | Homology to gene products of other bacteriophage or bacterium
|
Percent identity | Accession number | ||
|---|---|---|---|---|---|---|
| Phage | Host bacterium | Gene product | ||||
| I | 23-283 | VGJ | V. cholerae | Rolling circle replication protein | 60 | NP835472 |
| I | 1-1101 | VSKK | V. cholerae | Putative replication protein | 98 | NP536619 |
| I | 1-1101 | VSK | V. cholerae | rep-VSK | 89 | NP542355 |
| I | 1-498 | fs1 | V. cholerae | Hypothetical protein | 99 | NP695201 |
| I | 40-1083 | CTX | V. cholerae | RstA | 38 | NP231097 |
| I | 40-1083 | Vf33, Vf12, f237, VfO3K6, VfO4K68, | V. parahaemolyticus | Putative replication protein | 38 | BAA33512, BAA33520, NP797930, NP059531, NP059541 |
| I | 40-1095 | Vibrio vulnificus | Putative replication protein | 34 | NP936848 | |
| I | 292-1101 | VGJphi | V. cholerae | Rolling circle replication protein | 100 | NP835472 |
| I | 408-491 | VSK | V. cholerae | rep-VSK | 65 | NP542355 |
| I | 469-972 | V. cholerae | Catalase | 45 | AAP84006 | |
| I | 496-1101 | fs1 | V. cholerae | Hypothetical protein | 99 | NP695202 |
| II | 1109-1327 | VGJ | V. cholerae | Putative ssDNA binding protein | 98 | NP835473 |
| II | 1109-1327 | VSKK, fs1 | V. cholerae | Hypothetical protein | 98 | NP536620NP695203 |
| II | 1136-1327 | VSK | V. cholerae | VSK-int | 92 | NP542356 |
| II | 1166-1324 | Vf33, Vf12, f237, VfO3K6, VfO4K68 | V. parahaemolyticus | Hypothetical protein | 44 | BAA33506, BAA33514, NP797931, NP059532, NP059542 |
| Intergenic | 1333-1449 | VGJ | V. cholerae | Putative ssDNA binding protein | 69 | NP835473 |
| Intergenic | 1333-1449 | fs1 | V. cholerae | Hypothetical protein | 69 | NP695203 |
| Intergenic | 1333-1425 | VSKK | V. cholerae | Hypothetical protein | 77 | NP536620 |
| Intergenic | 1333-1425 | VSK | V. cholerae | VSK-int | 77 | NP542356 |
| Intergenic | 1333-1425 | Vf33, Vf12 | V. parahaemolyticus | Hypothetical protein | 48 | BAA33506, BAA33514 |
| Intergenic | 1333-1425 | VfO3K6, FO4K68, f237 | V. parahaemolyticus | Hypothetical protein | 45 | NP059532, NP059542, NP797931 |
| IX | 3453-3782 | VfO3K6, f237, VfO4K68 | V. parahaemolyticus | Hypothetical protein | 27 | NP059536, NP797936, NP059546 |
| X | 3800-5164 | VfO3K6, VfO4K68, f237 | V. parahaemolyticus | Zot-like protein | 39 | NP059537, NP059547, NP797937 |
| X | 3800-4807 | CTX | V. cholerae | Zonula occludens toxin | 25 | AAL09680 |
| X | 3800-4762 | Pseudomonas aeruginosa | Zonula occludens toxin | 23 | ZP00138787 | |
| X | 3800-4612 | Pf1 | Pseudomonas aeruginosa | Hypothetical protein | 26 | NP039606 |
| Intergenic | 6942-7106 | VGJ | V. cholerae | Hypothetical protein | 58 | NP835484 |
| Intergenic | 6955-7032 | VGJ | V. cholerae | Hypothetical protein | 69 | NP835484 |