TABLE 3.
Strains used in this study and associated multiplex real-time PCR results
| Phenotype of strains | Genotype | Total no. of subjects (n = 217j) | No. of positive results with probe specific for:
|
|
|---|---|---|---|---|
| O157h | stx2i | |||
| E. coli O157:H7a | stx2 | 30 | 30 | 30 |
| E. coli O157:H7 | stx1 | 4 | 4 | 0 |
| E. coli O157:H7 | Non-stx | 1 | 1 | 0 |
| Non-O157 clinical E. colib from Taiwan | Othersf | 158 | 0 | 0 |
| Non-O157 clinical E. colic with stx2 gene from Taiwan | O28 and stx2g | 2 | 0 | 2 |
| Salmonella Enteritidis strainsd | 10 | 0 | 0 | |
| Shigella spp.e | 10 | 0 | 0 | |
| Pseudomonase | 1 | 0 | 0 | |
| Citrobacter freundii ATCC 8090e | 1 | 0 | 0 | |
All strains were isolated from the United States (10 strains), Canada (12 strains), Japan (9 strains), and Taiwan (4 strains).
All strains were isolated from clinical samples of diarrhea cases in Taiwan.
All strains were isolated from clinical samples in Taiwan by the Centers for Disease Control, Taiwan.
All strains were isolated from food-borne cases by the Centers for Disease Control, Taiwan.
All strains were from Bioresource Collection and Research Center, Hsinchu, Taiwan.
All genotypes are non-stx2; and their phenotypes include the following: O1, O3, O6:H?, O6:H12, O8:H?, O8; O14; O15:H21 O15:NM, O18, O20:H20, O23, O25:H51, O25:K98:NM, O26:H?, O26:H11, O27, O28:H?, O28ac:H?, O28ac, O29:H?, O29:NM, O30, O38, O44, O48, O55:H?, O55:H12, O75, O78:H11, O78:H2, O78:K80:H12, O86a, O90, O111ab:H21, O112ac:H?, O114, O115, O123, O124:H?, O125, O127a:H1, O127a:H16, O136:H19, O138, O142:H6, O144, O146:NM, O148, O153:NM, O158, O159:H21, O166, O168, O169:H28, and unknowns.
All genotypes are stx2, and the serotype was O28ac.
Numbers of positive results by the multiplex real-time PCR assay for the rfbE. coli O157:H7 gene.
Numbers of positive results by the multiplex real-time PCR assay for the stx2 gene.
Total numbers of strains in this study.